Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_L23
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031627-13|CAA20964.1|  304|Caenorhabditis elegans Hypothetical...    28   6.6  
AL032640-5|CAA21644.1|  475|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AL031627-13|CAA20964.1|  304|Caenorhabditis elegans Hypothetical
           protein Y102A5C.23 protein.
          Length = 304

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 367 FYHQETQILLMFKLSCLDIFYC 302
           FYH      L+F L+C+ +F+C
Sbjct: 67  FYHMVIIYYLIFVLTCISVFFC 88


>AL032640-5|CAA21644.1|  475|Caenorhabditis elegans Hypothetical
           protein Y43F8A.5 protein.
          Length = 475

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 399 AFFCTRWIAHSSTTKRRK 346
           AFF +RW+ H S  K RK
Sbjct: 74  AFFTSRWVGHLSDVKSRK 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,219,817
Number of Sequences: 27780
Number of extensions: 234339
Number of successful extensions: 450
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)