Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_L19
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    27   1.9  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    25   5.8  
SPAC23C11.17 |||mitochondrial inner membrane protein involved in...    25   5.8  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   7.7  
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    25   7.7  

>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 254 VHHPAQSAATPVMSLDPLLPSLQFSG 177
           + HP    A PV SL PL+ S+  SG
Sbjct: 632 LRHPFLKQAVPVSSLIPLIKSIHHSG 657


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1297

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 14/48 (29%), Positives = 28/48 (58%)
 Frame = -2

Query: 190  YSLVVWITTRN*LILFIDLSRNYRCTLDEKYVFKTVNYYYAAKN*HKI 47
            Y++  W+  +    +F++LSRN+   +D++   + V+ Y+ A   HKI
Sbjct: 962  YAIPFWLNEQLLKDVFLELSRNHYAEIDDRNP-ENVSLYHIAL--HKI 1006


>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
           potassium ion transport|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 338 PPRTFLPALCKIFLDECAPDNVLEVTARAITYYLDVSA 451
           P R  L  +CK F D+   DN+      A+  Y++++A
Sbjct: 264 PSREELIEVCKYFKDDITLDNLSRAQLVAMCRYMNLNA 301


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 217 CLWIHFCHLYSLVVWITT 164
           C W+H  HLYS    IT+
Sbjct: 639 CRWLHMVHLYSSRTSITS 656


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 373 NLAQSWKKCSWWTAFKTPVXIIRH 302
           N A + K+  +WTA+ T   ++RH
Sbjct: 356 NAASAVKRSVFWTAYYTKAKLMRH 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,278,092
Number of Sequences: 5004
Number of extensions: 45438
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)