Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_L19
(563 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,879... 36 0.022
04_03_0608 - 17954932-17955969 30 1.1
06_01_0971 + 7498971-7499477,7499578-7499715,7500653-7500732,750... 30 1.5
03_02_0353 + 7756308-7756732,7757835-7757940,7757976-7758371 29 3.4
04_03_0600 - 17856213-17856382,17856434-17857393,17857644-178578... 28 4.5
03_05_0927 - 28874819-28877098,28877689-28877691 28 4.5
06_03_1225 + 28538515-28538721,28538799-28539000,28539241-285394... 28 5.9
04_03_0602 - 17884667-17885817,17885946-17886113,17886413-17887313 28 5.9
04_01_0150 + 1741639-1741742,1742432-1742543,1742856-1743594,174... 28 5.9
01_05_0345 + 21181114-21181222,21181306-21181367,21181505-211815... 28 5.9
06_03_0746 - 24111579-24112348,24113164-24113256,24113355-241134... 27 7.8
04_03_0616 - 18052596-18053779,18053935-18054099,18056236-180562... 27 7.8
>02_01_0014 -
87215-87280,87358-87495,87593-87721,87801-87869,
87962-88042,88133-88237,88338-88568,88665-90197,
90660-90752,91477-92887,93184-93305,93479-93718,
94521-94682,94770-94937,95025-95141,95266-95376,
95919-96506
Length = 1787
Score = 35.9 bits (79), Expect = 0.022
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Frame = +2
Query: 233 LTGQGDERDMQLIALEQLCMLLLMSDNVDRCFESCPPRTFLPALCKIF------LDECAP 394
L GDE QL +L QLC +L S + + P F+P L + +P
Sbjct: 92 LQSDGDE-SRQLQSLMQLCEML--SIGTEESLAAFPVDAFVPILVGLLGPGEDGAGGASP 148
Query: 395 DNVLEVTARAITYYLDVSAECTRRIVXIEGAVKAICNRLLTVD 523
D V+ + ARA+ +DV +V GA+ C RLLT++
Sbjct: 149 D-VMLLAARALANLVDVLPSSCSAVVHY-GAIPCFCARLLTIE 189
>04_03_0608 - 17954932-17955969
Length = 345
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +2
Query: 137 IDE*NQLISSGDPYH*TVKMAEVDPETLLEWLLTGQGDERDMQLIALEQL 286
IDE NQ + G P + +DP+ LLE+ LT + D +I LE L
Sbjct: 173 IDEENQAVPKGTPGY-------IDPDYLLEYQLTSKNDVYSFGVILLELL 215
>06_01_0971 +
7498971-7499477,7499578-7499715,7500653-7500732,
7501175-7501584,7503650-7503834,7504280-7504365,
7504641-7504774,7506491-7506790,7506999-7507147,
7507762-7507845
Length = 690
Score = 29.9 bits (64), Expect = 1.5
Identities = 8/19 (42%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Frame = -2
Query: 391 CTFIQKNLAQSWK-KCSWW 338
C F ++N ++WK +C+WW
Sbjct: 579 CVFFEQNTRETWKVRCTWW 597
>03_02_0353 + 7756308-7756732,7757835-7757940,7757976-7758371
Length = 308
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 311 NVDRCFESCPPRTFLPALCKIFLDECAPDNV 403
N+ RC SC P CKI+ ++ D+V
Sbjct: 103 NIPRCISSCVEAKIDPPYCKIWCEDMCGDDV 133
>04_03_0600 -
17856213-17856382,17856434-17857393,17857644-17857808,
17858357-17858399
Length = 445
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +2
Query: 137 IDE*NQLISSGDPYH*TVKMAEVDPETLLEWLLTGQGDERDMQLIALEQL 286
IDE Q++ G P + +DP+ LLE+ LT D +I LE L
Sbjct: 290 IDEKTQVVPKGTPGY-------IDPDYLLEYQLTASNDVYSFGVILLELL 332
>03_05_0927 - 28874819-28877098,28877689-28877691
Length = 760
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -1
Query: 302 LVEAYTAVQEQ*VAYHVHHPAQSAATPVMSLDPLLPSLQFSGMDHH 165
L A+ A + +Y+ A + T + + LLP + FSG++HH
Sbjct: 346 LTHAFWADAKARTSYYYFGDAVTLETSFVENNDLLPLVMFSGVNHH 391
>06_03_1225 +
28538515-28538721,28538799-28539000,28539241-28539472,
28539560-28539713,28539792-28540136
Length = 379
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 422 AITYYLDVSAECTRRIVXIEGAV 490
A+T DV+ ECTRR+V G +
Sbjct: 195 AVTLVSDVAEECTRRVVGTSGYI 217
>04_03_0602 - 17884667-17885817,17885946-17886113,17886413-17887313
Length = 739
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +2
Query: 137 IDE*NQLISSGDPYH*TVKMAEVDPETLLEWLLTGQGDERDMQLIALEQL 286
IDE Q + G P + +DP+ LLE+ LT + D +I LE L
Sbjct: 577 IDENTQAVPKGTPGY-------IDPDYLLEYQLTSKNDVYSFGVILLELL 619
>04_01_0150 +
1741639-1741742,1742432-1742543,1742856-1743594,
1743724-1743776,1743914-1743991,1744107-1744405,
1744660-1745476,1745576-1745842,1745987-1746181,
1746287-1746372,1746469-1746657,1747138-1747207,
1747399-1747552,1747706-1747832,1749158-1749254
Length = 1128
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 539 LNVDMGQLSTVC-CI*PSQLPQLXQCALYTQQTHPDNM 429
LN + +S V C+ PSQ PQ Q +Q HP N+
Sbjct: 154 LNFNTTAISPVAMCVHPSQQPQSQQHQQQAKQLHPTNV 191
>01_05_0345 +
21181114-21181222,21181306-21181367,21181505-21181588,
21182069-21182123,21182843-21182969,21183129-21183179,
21183275-21183374
Length = 195
Score = 27.9 bits (59), Expect = 5.9
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Frame = -2
Query: 502 AYSLHSSLNXYNAPCTLSRHIQIICDSSC-----SNF*NIIRCTFIQKNLAQSWKKCSWW 338
A+ ++S + AP L H + D S +++ + C F K L SWKK W+
Sbjct: 69 AFLVYSGFHHAAAPWELRYHAYFMEDLSSPMVVVADWIAALACLFSIKGLLHSWKKWMWY 128
Query: 337 TAF 329
+ +
Sbjct: 129 SFY 131
>06_03_0746 -
24111579-24112348,24113164-24113256,24113355-24113460,
24113587-24113783,24113893-24114103,24114198-24114273,
24114347-24114426,24114659-24114754,24114894-24114965,
24115067-24115264,24115273-24115569
Length = 731
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = -2
Query: 499 YSLHSSLNXYNAPCTLSRHIQIICDSSCSNF*NIIRCTFI 380
Y++H + N + C + + +IC C N I C F+
Sbjct: 55 YTIHKARNATQSICISTMAMNLICSCKCLNEVMKISCAFL 94
>04_03_0616 -
18052596-18053779,18053935-18054099,18056236-18056260,
18057259-18057312,18057354-18057619,18058633-18059371
Length = 810
Score = 27.5 bits (58), Expect = 7.8
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +2
Query: 137 IDE*NQLISSGDPYH*TVKMAEVDPETLLEWLLTGQGDERDMQLIALEQL 286
IDE Q + G P + +DPE LLE+ LT + D +I LE L
Sbjct: 637 IDEKTQSMLKGTPGY-------IDPEYLLEYQLTAKNDVYSFGVILLELL 679
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,063,370
Number of Sequences: 37544
Number of extensions: 274896
Number of successful extensions: 642
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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