Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_L19
         (563 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical p...   197   4e-51
AF045646-10|AAU05566.1|  548|Caenorhabditis elegans Skp1 related...    30   1.3  
AF045646-9|AAL32223.1|  660|Caenorhabditis elegans Skp1 related ...    30   1.3  
U40953-2|AAB52647.1|  483|Caenorhabditis elegans Hypothetical pr...    29   1.7  
U97008-16|AAB52300.1|  303|Caenorhabditis elegans Serpentine rec...    27   7.0  

>U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical
           protein C34D4.14 protein.
          Length = 2761

 Score =  197 bits (481), Expect = 4e-51
 Identities = 89/110 (80%), Positives = 98/110 (89%)
 Frame = +2

Query: 194 MAEVDPETLLEWLLTGQGDERDMQLIALEQLCMLLLMSDNVDRCFESCPPRTFLPALCKI 373
           M  +DPETLLEWL TG GDERD+QL+ALEQLCMLLLM+DN+DRCFESCPPRTF+PALCKI
Sbjct: 1   MDGIDPETLLEWLQTGIGDERDLQLMALEQLCMLLLMADNIDRCFESCPPRTFIPALCKI 60

Query: 374 FLDECAPDNVLEVTARAITYYLDVSAECTRRIVXIEGAVKAICNRLLTVD 523
           F+DE APDNVLEVTARAITYYLDVS ECTRRI  ++GAVKAIC RL   D
Sbjct: 61  FIDETAPDNVLEVTARAITYYLDVSNECTRRITQVDGAVKAICTRLAAAD 110


>AF045646-10|AAU05566.1|  548|Caenorhabditis elegans Skp1 related
           (ubiquitin ligasecomplex component) protein 18, isoform
           b protein.
          Length = 548

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
 Frame = +2

Query: 257 DMQLIALEQLCMLLLMSDNVDRCFESCPPRTFLPALCKIFL---DECAPDNVLEVTARAI 427
           D++++ L  L  LLL S+     F    P  F   + ++FL   +  A D + E   R +
Sbjct: 417 DVEIVRLSLLWTLLLFSERKSAFFAFAEPNEFYVHIAEVFLIGAEILADDVIAECAHRIL 476

Query: 428 TYYLDVSAECTRRIVXIEGAVKAI 499
             Y+  +A+  +  + + G V  +
Sbjct: 477 NGYILAAAKDAKIGLRMSGKVAGL 500


>AF045646-9|AAL32223.1|  660|Caenorhabditis elegans Skp1 related
           (ubiquitin ligasecomplex component) protein 18, isoform
           a protein.
          Length = 660

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
 Frame = +2

Query: 257 DMQLIALEQLCMLLLMSDNVDRCFESCPPRTFLPALCKIFL---DECAPDNVLEVTARAI 427
           D++++ L  L  LLL S+     F    P  F   + ++FL   +  A D + E   R +
Sbjct: 417 DVEIVRLSLLWTLLLFSERKSAFFAFAEPNEFYVHIAEVFLIGAEILADDVIAECAHRIL 476

Query: 428 TYYLDVSAECTRRIVXIEGAVKAI 499
             Y+  +A+  +  + + G V  +
Sbjct: 477 NGYILAAAKDAKIGLRMSGKVAGL 500


>U40953-2|AAB52647.1|  483|Caenorhabditis elegans Hypothetical
           protein F53B1.2 protein.
          Length = 483

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +2

Query: 140 DE*NQLISSGDPYH*TVKMAEV--DPETLLEWLLTGQGDERDMQLIALEQL 286
           +E N L  SG+  + T + AE+  D ETLL+ L         +QLI+ E++
Sbjct: 114 NEQNHLSISGEDVYTTTRRAEIVEDEETLLDTLAKSSDGTSTVQLISREEI 164


>U97008-16|AAB52300.1|  303|Caenorhabditis elegans Serpentine
           receptor, class sx protein24 protein.
          Length = 303

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -2

Query: 199 CHLYSL--VVWITTRN*LILFIDLSRNYRCTLDEKYVFKTVNYYY 71
           C L S+  +  +  ++ L LFI + R Y      KY   ++NYYY
Sbjct: 79  CFLISIYGIFAMNMQSLLALFIGIDRVYVIVYPGKYAKLSINYYY 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,684,621
Number of Sequences: 27780
Number of extensions: 263050
Number of successful extensions: 682
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)