Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_L18
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    30   0.34 
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.5  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    25   9.5  

>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 16/72 (22%), Positives = 35/72 (48%)
 Frame = +3

Query: 216 TINFQTFVNSFQNRLEPPVRQHLKNVYATLMMTCVSASAGVYVDMFTRFQAGFLSAIVGA 395
           TI+ ++F        E   + ++ N+   + ++ + A+  V V++ TR    +   IVG 
Sbjct: 730 TIDIESFWTPVDVVEEKSAKTYIDNLVGVMRLSVIKANDLVNVELPTRKSDPYARVIVGN 789

Query: 396 GLMLMLIATPDN 431
            ++   + TP+N
Sbjct: 790 SVVARTVYTPNN 801


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -3

Query: 546 YYDRWVNYTDIFKPGDPCSCLMLIQIQVDSRVV 448
           +  R  NY ++ K     +CL  ++I  DS+++
Sbjct: 281 FLSRLQNYPNVSKDARDAACLYALKIAKDSKII 313


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -1

Query: 653 NSVINVPPRNSQLPRSASIAAAEKHTNTRVVPSRAVIMIDGSTTLTYS 510
           NS+++V   N    R  SI   E H+N  V+  R V+   G  +L  S
Sbjct: 528 NSILSVYDPNVSQHRVPSINGNESHSNVHVI--RQVVNSTGPVSLDQS 573


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,713,794
Number of Sequences: 5004
Number of extensions: 55492
Number of successful extensions: 145
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)