Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_L18
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical p...    31   0.94 
U39742-3|AAY86225.1|  188|Caenorhabditis elegans Hypothetical pr...    28   5.0  

>U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical
           protein C56C10.12 protein.
          Length = 1599

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -1

Query: 638 VPPRNSQLPRSAS-IAAAEKHTNTRVVPSRAV 546
           +PPR+   PRS S +A + K + T V P R+V
Sbjct: 103 IPPRSMIFPRSTSMVAESRKESTTAVAPKRSV 134


>U39742-3|AAY86225.1|  188|Caenorhabditis elegans Hypothetical
           protein C25F6.8 protein.
          Length = 188

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 549 SYYDRWVNYTDIFKPGDPCSC 487
           ++ DR+VN TD+F+P +  SC
Sbjct: 92  TFCDRYVNKTDVFEPHNTWSC 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,072,134
Number of Sequences: 27780
Number of extensions: 315594
Number of successful extensions: 758
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)