Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_L09
         (345 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces...    87   5e-19
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    28   0.47 
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   0.82 
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot...    27   1.1  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    24   5.8  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    24   7.6  

>SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 51

 Score = 87.4 bits (207), Expect = 5e-19
 Identities = 35/51 (68%), Positives = 43/51 (84%)
 Frame = +3

Query: 33  MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 185
           M +HK+F  K+KLAK  +QNRPIPQW+R+RTGNT+ YN KRRHWRRTKL +
Sbjct: 1   MPSHKSFRTKQKLAKAARQNRPIPQWIRLRTGNTVHYNMKRRHWRRTKLNI 51


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 27.9 bits (59), Expect = 0.47
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 197 FTSLQLELCPSPVTPLSVISNSVSCAHPYPL 105
           ++S+ L    +P TP S  +N V CA P PL
Sbjct: 332 YSSIPLPAERNPKTPQSFSTNIVQCASPSPL 362


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.1 bits (57), Expect = 0.82
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 167  SPVTPLSVISNSVSCAHPYPLRNGS 93
            +P TP++V S++V+ AH Y    GS
Sbjct: 982  NPYTPIAVASSTVNPAHTYKPHGGS 1006


>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
           1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -2

Query: 155 PLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLMGRHFEQSSCQKQS 3
           P  +I +S S  HP PL +G VL +   +   NNK  +   +   SC + S
Sbjct: 109 PAMLILDSKSI-HPLPLTDGEVLHRWECEVDSNNKTTIDLKYWYCSCSQFS 158


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = +3

Query: 81  LKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTK 176
           +K+ +P+P+W  ++ G     +     W R K
Sbjct: 23  VKELKPLPEWKSLKFGENFTDHMLIMKWNREK 54


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -3

Query: 229 YRVFITLHLTHSQAYNLSFVLLQ*RLLALYRIV 131
           YRVFI LHL    A   +FVL +  L  +Y I+
Sbjct: 236 YRVFIELHLNEEIA--AAFVLQKPILPLIYNIL 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 965,409
Number of Sequences: 5004
Number of extensions: 16448
Number of successful extensions: 61
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)