Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_L04
         (653 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089648-1|AAL90386.1|  252|Drosophila melanogaster RH04903p pro...   221   7e-58
AE014134-1774|AAF52868.1|  252|Drosophila melanogaster CG4897-PA...   221   7e-58
X15109-1|CAA33207.1|  239|Drosophila melanogaster ribosomal  pro...   213   2e-55
BT028802-1|ABI34183.1|  227|Drosophila melanogaster LP23547p pro...    87   2e-17
AY071314-1|AAL48936.1|  257|Drosophila melanogaster RE33833p pro...    85   6e-17
BT029578-1|ABL75637.1|  257|Drosophila melanogaster IP16905p pro...    83   2e-16
BT029555-1|ABL75615.1|  257|Drosophila melanogaster IP16805p pro...    83   2e-16
BT021218-1|AAX33366.1|  257|Drosophila melanogaster RH63749p pro...    83   2e-16
AE014134-2146|AAF53155.2|  257|Drosophila melanogaster CG5317-PA...    83   2e-16
AY051415-1|AAK92839.1|  382|Drosophila melanogaster GH09360p pro...    30   2.4  
AE014297-77|AAF52133.1|  382|Drosophila melanogaster CG9855-PA p...    30   2.4  
AE014297-4130|AAF56715.1|  448|Drosophila melanogaster CG13972-P...    29   4.2  

>AY089648-1|AAL90386.1|  252|Drosophila melanogaster RH04903p
           protein.
          Length = 252

 Score =  221 bits (540), Expect = 7e-58
 Identities = 108/178 (60%), Positives = 132/178 (74%)
 Frame = +1

Query: 118 PVKGKEDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKE 297
           PV  K  +KKLPAVPES LK             +  LK+ +    +K+E   RAE+Y  E
Sbjct: 4   PVVKKPAAKKLPAVPESKLKFSKKQISKRVAESKRRLKKAAVIALRKKENLVRAEKYQNE 63

Query: 298 YRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNG 477
           Y   E+ EI+L R A+ R  +YVP EAKLAFV+RIRGIN+V+PKVRKVLQLFRLRQINNG
Sbjct: 64  YIKAEQREIKLRRLAKKRNQFYVPAEAKLAFVVRIRGINKVAPKVRKVLQLFRLRQINNG 123

Query: 478 VFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKR 651
           VF++LNKAT+NMLRIAEPYI WGYPNLKSVREL+YKRGF K + QR+PIT N ++E++
Sbjct: 124 VFIKLNKATINMLRIAEPYITWGYPNLKSVRELIYKRGFVKHNRQRVPITDNFVIERK 181


>AE014134-1774|AAF52868.1|  252|Drosophila melanogaster CG4897-PA
           protein.
          Length = 252

 Score =  221 bits (540), Expect = 7e-58
 Identities = 108/178 (60%), Positives = 132/178 (74%)
 Frame = +1

Query: 118 PVKGKEDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKE 297
           PV  K  +KKLPAVPES LK             +  LK+ +    +K+E   RAE+Y  E
Sbjct: 4   PVVKKPAAKKLPAVPESKLKFSKKQISKRVAESKRRLKKAAVIALRKKENLVRAEKYQNE 63

Query: 298 YRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNG 477
           Y   E+ EI+L R A+ R  +YVP EAKLAFV+RIRGIN+V+PKVRKVLQLFRLRQINNG
Sbjct: 64  YIKAEQREIKLRRLAKKRNQFYVPAEAKLAFVVRIRGINKVAPKVRKVLQLFRLRQINNG 123

Query: 478 VFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKR 651
           VF++LNKAT+NMLRIAEPYI WGYPNLKSVREL+YKRGF K + QR+PIT N ++E++
Sbjct: 124 VFIKLNKATINMLRIAEPYITWGYPNLKSVRELIYKRGFVKHNRQRVPITDNFVIERK 181


>X15109-1|CAA33207.1|  239|Drosophila melanogaster ribosomal
           protein protein.
          Length = 239

 Score =  213 bits (520), Expect = 2e-55
 Identities = 103/168 (61%), Positives = 126/168 (75%)
 Frame = +1

Query: 148 LPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIR 327
           LPAVPES LK             +  LK+ +    +K+E   RAE+Y  EY   E+ EI+
Sbjct: 1   LPAVPESKLKFSKKQISKRVAESKRRLKKAAVIALRKKENLVRAEKYQNEYIKAEQREIK 60

Query: 328 LARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATV 507
           L R A+ R  +YVP EAKLAFV+RIRGIN+V+PKVRKVLQLFRLRQINNGVF++LNKAT+
Sbjct: 61  LRRLAKKRNQFYVPAEAKLAFVVRIRGINKVAPKVRKVLQLFRLRQINNGVFIKLNKATI 120

Query: 508 NMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKR 651
           NMLRIAEPYI WGYPNLKSVREL+YKRGF K + QR+PIT N ++E++
Sbjct: 121 NMLRIAEPYITWGYPNLKSVRELIYKRGFVKHNRQRVPITDNFVIERK 168


>BT028802-1|ABI34183.1|  227|Drosophila melanogaster LP23547p
           protein.
          Length = 227

 Score = 87.0 bits (206), Expect = 2e-17
 Identities = 51/124 (41%), Positives = 73/124 (58%), Gaps = 1/124 (0%)
 Frame = -3

Query: 651 PLLNNAVGSDWYTLSTQLGESTFVY*LTDTL*VGVSPSNVRLGDT*HIHSSLIQTYKHTI 472
           PL +  +G D + L+  L EST V  L   L +G++P +V LGD  H+   L+Q  +HT+
Sbjct: 17  PLDHEVIG-DGHALAVMLHESTLVDQLPHGLQIGIAPGDVGLGDAQHVDGGLVQLDEHTV 75

Query: 471 VYLAQSKQLQNFTDLR*NLVDTTDSDDKCQFGFPGNVVVATIACLSG*SDFITF-LDAVF 295
           V L Q++QLQN  DL  +LVDT D+DDK QFG  G+V +  +   +   D   F LD + 
Sbjct: 76  VDLPQTEQLQNLADLGSHLVDTADTDDKGQFGLGGHVELVALLGQATQLDLALFRLDVLI 135

Query: 294 LDVL 283
           L +L
Sbjct: 136 LVLL 139


>AY071314-1|AAL48936.1|  257|Drosophila melanogaster RE33833p
           protein.
          Length = 257

 Score = 85.4 bits (202), Expect = 6e-17
 Identities = 56/180 (31%), Positives = 89/180 (49%), Gaps = 11/180 (6%)
 Frame = +1

Query: 145 KLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREI-----FKRAEQYVKEYRIK 309
           KLP    SVLKH             V  ++R+  IKK+        F+RAE +V  Y   
Sbjct: 10  KLPGKTVSVLKHRKRRILQDE---SVVTQKRNDRIKKRTATKNHHKFRRAESFVMGYLKA 66

Query: 310 ERDEIRLARQARNRGNYYVPGEA------KLAFVIRIRGINQVSPKVRKVLQLFRLRQIN 471
           ER   R+ +            +A      KL FV+R+ G          + +  R+   +
Sbjct: 67  ERTSKRIKQTILRTNVTEQSAKAADDSNPKLLFVMRLAGKKIFDKTTADIFRTLRMGSRH 126

Query: 472 NGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKR 651
           N VF+   K    +LR+ EP++ +G P+L S+RELV+K+GFA++ G++  I SN++VE++
Sbjct: 127 NAVFMENTKENQLLLRVIEPFVVYGNPSLSSIRELVFKKGFARIDGKKTAIQSNTMVEQQ 186


>BT029578-1|ABL75637.1|  257|Drosophila melanogaster IP16905p
           protein.
          Length = 257

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 56/180 (31%), Positives = 88/180 (48%), Gaps = 11/180 (6%)
 Frame = +1

Query: 145 KLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREI-----FKRAEQYVKEYRIK 309
           KLP    SVLKH             V  ++R+  IKK+        F+RAE +V  Y   
Sbjct: 10  KLPGKTVSVLKHRKRRILQDE---SVVTQKRNDRIKKRTATKNHHKFRRAESFVMGYLKA 66

Query: 310 ERDEIRLARQARNRGNYYVPGEA------KLAFVIRIRGINQVSPKVRKVLQLFRLRQIN 471
           ER   R+ +            +A      KL FV+R  G          + +  R+   +
Sbjct: 67  ERTSKRIKQTILRTNVTEQSAKAADDSNPKLLFVMRHAGKKIFDKTTADIFRTLRMGSRH 126

Query: 472 NGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKR 651
           N VF+   K    +LR+ EP++ +G P+L S+RELV+K+GFA++ G++  I SN++VE++
Sbjct: 127 NAVFMENTKENQLLLRVIEPFVVYGNPSLSSIRELVFKKGFARIDGKKTAIQSNTMVEQQ 186


>BT029555-1|ABL75615.1|  257|Drosophila melanogaster IP16805p
           protein.
          Length = 257

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 56/180 (31%), Positives = 88/180 (48%), Gaps = 11/180 (6%)
 Frame = +1

Query: 145 KLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREI-----FKRAEQYVKEYRIK 309
           KLP    SVLKH             V  ++R+  IKK+        F+RAE +V  Y   
Sbjct: 10  KLPGKTVSVLKHRKRRILQDE---SVVTQKRNDRIKKRTATKNHHKFRRAESFVMGYLKA 66

Query: 310 ERDEIRLARQARNRGNYYVPGEA------KLAFVIRIRGINQVSPKVRKVLQLFRLRQIN 471
           ER   R+ +            +A      KL FV+R  G          + +  R+   +
Sbjct: 67  ERTSKRIKQTILRTNVTEQSAKAADDSNPKLLFVMRHAGKKIFDKTTADIFRTLRMGSRH 126

Query: 472 NGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKR 651
           N VF+   K    +LR+ EP++ +G P+L S+RELV+K+GFA++ G++  I SN++VE++
Sbjct: 127 NAVFMENTKENQLLLRVIEPFVVYGNPSLSSIRELVFKKGFARIDGKKTAIQSNTMVEQQ 186


>BT021218-1|AAX33366.1|  257|Drosophila melanogaster RH63749p
           protein.
          Length = 257

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 56/180 (31%), Positives = 88/180 (48%), Gaps = 11/180 (6%)
 Frame = +1

Query: 145 KLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREI-----FKRAEQYVKEYRIK 309
           KLP    SVLKH             V  ++R+  IKK+        F+RAE +V  Y   
Sbjct: 10  KLPGKTVSVLKHRKRRILQDE---SVVTQKRNDRIKKRTATKNHHKFRRAESFVMGYLKA 66

Query: 310 ERDEIRLARQARNRGNYYVPGEA------KLAFVIRIRGINQVSPKVRKVLQLFRLRQIN 471
           ER   R+ +            +A      KL FV+R  G          + +  R+   +
Sbjct: 67  ERTSKRIKQTILRTNVTEQSAKAADDSNPKLLFVMRHAGKKIFDKTTADIFRTLRMGSRH 126

Query: 472 NGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKR 651
           N VF+   K    +LR+ EP++ +G P+L S+RELV+K+GFA++ G++  I SN++VE++
Sbjct: 127 NAVFMENTKENQLLLRVIEPFVVYGNPSLSSIRELVFKKGFARIDGKKTAIQSNTMVEQQ 186


>AE014134-2146|AAF53155.2|  257|Drosophila melanogaster CG5317-PA
           protein.
          Length = 257

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 56/180 (31%), Positives = 88/180 (48%), Gaps = 11/180 (6%)
 Frame = +1

Query: 145 KLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREI-----FKRAEQYVKEYRIK 309
           KLP    SVLKH             V  ++R+  IKK+        F+RAE +V  Y   
Sbjct: 10  KLPGKTVSVLKHRKRRILQDE---SVVTQKRNDRIKKRTATKNHHKFRRAESFVMGYLKA 66

Query: 310 ERDEIRLARQARNRGNYYVPGEA------KLAFVIRIRGINQVSPKVRKVLQLFRLRQIN 471
           ER   R+ +            +A      KL FV+R  G          + +  R+   +
Sbjct: 67  ERTSKRIKQTILRTNVTEQSAKAADDSNPKLLFVMRHAGKKIFDKTTADIFRTLRMGSRH 126

Query: 472 NGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKR 651
           N VF+   K    +LR+ EP++ +G P+L S+RELV+K+GFA++ G++  I SN++VE++
Sbjct: 127 NAVFMENTKENQLLLRVIEPFVVYGNPSLSSIRELVFKKGFARIDGKKTAIQSNTMVEQQ 186


>AY051415-1|AAK92839.1|  382|Drosophila melanogaster GH09360p
           protein.
          Length = 382

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +1

Query: 214 LQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYV-PGEAKLAF 390
           L++ LK++    +KKR I    E+ ++ +  +  +    ARQ R      V P E + A 
Sbjct: 310 LKIYLKQKQYGRRKKRRIVDYTEENIRNFMHRNNNSAAAARQERLPEQRPVPPAERRDAV 369

Query: 391 VIRIRG 408
           + R RG
Sbjct: 370 ITRQRG 375


>AE014297-77|AAF52133.1|  382|Drosophila melanogaster CG9855-PA
           protein.
          Length = 382

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +1

Query: 214 LQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYV-PGEAKLAF 390
           L++ LK++    +KKR I    E+ ++ +  +  +    ARQ R      V P E + A 
Sbjct: 310 LKIYLKQKQYGRRKKRRIVDYTEENIRNFMHRNNNSAAAARQERLPEQRPVPPAERRDAV 369

Query: 391 VIRIRG 408
           + R RG
Sbjct: 370 ITRQRG 375


>AE014297-4130|AAF56715.1|  448|Drosophila melanogaster CG13972-PA
           protein.
          Length = 448

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = +1

Query: 217 QVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRL 330
           ++ +  +   ++K +EI++    YV+EYR ++ +E RL
Sbjct: 367 ELRILEQKKLLQKHKEIYEERMTYVQEYRAQKEEEQRL 404


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,091,859
Number of Sequences: 53049
Number of extensions: 527252
Number of successful extensions: 1334
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1331
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2786177250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)