Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_L03
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 31 0.14
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom... 29 0.58
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac... 28 1.0
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 28 1.3
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 28 1.3
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 27 3.1
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 26 4.1
SPBC30B4.08 |eri1||double-strand siRNA ribonuclease|Schizosaccha... 26 4.1
SPAC1952.07 |rad1||checkpoint clamp complex protein Rad1|Schizos... 26 4.1
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat... 25 7.1
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 7.1
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 25 7.1
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 25 7.1
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 25 9.4
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 25 9.4
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 25 9.4
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 31.1 bits (67), Expect = 0.14
Identities = 14/39 (35%), Positives = 26/39 (66%)
Frame = +2
Query: 512 EEESTESQPTKDEQVTKEPNNRSESDEQEDDKAMDTQES 628
EEE TES+ +D +V+ E + SES+ + ++++ +ES
Sbjct: 90 EEEETESE--EDSEVSDESESESESESESEEESESEEES 126
>SPBC14F5.08 |med7||mediator complex subunit
Med7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 29.1 bits (62), Expect = 0.58
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +2
Query: 500 HQALEEESTESQPT-KDEQVTKEPNNRSESDEQEDDKAMDTQES 628
H A++E+ ES T KD + EP+ + E ++ + + +D+Q++
Sbjct: 149 HTAMKEKDNESDKTMKDVEEKTEPSLKKEEEDIQMKEPLDSQDT 192
>SPCC1827.02c |||cholinephosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 512 EEESTESQPTKDEQVTKEPNNRSESDEQEDDKAMDTQES 628
+E++ E Q K EP + + DE+EDDK +S
Sbjct: 16 KEDNVERQTKKYNFEIDEPEEQEKKDEKEDDKEESPSKS 54
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/69 (23%), Positives = 31/69 (44%)
Frame = +2
Query: 425 PRQQSLQTHLSPFRKKLAVTVMTATHQALEEESTESQPTKDEQVTKEPNNRSESDEQEDD 604
PRQ S + + T+ + E+E++ S T + V K N R++ +++ D
Sbjct: 34 PRQSEESAGQSTGTESEVIQTPTSVEENNEDENSMSTTTIEIPVVKRRNLRNQKKKKKTD 93
Query: 605 KAMDTQEST 631
+ + E T
Sbjct: 94 EEAEDNEDT 102
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 512 EEESTESQPTKDEQVTKEPNNRSESDEQEDDKAMDTQES 628
EEE E KDE K ++ + +E+E A+D +S
Sbjct: 186 EEEILEKPVPKDEVAEKHSKDKLKKEEKEKKTAVDVSDS 224
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 329 NIELSGSAVPVFASSAFFNLSTKAGLFPFVSNPRAPNSD 213
+ +S S + FAS +F +T + F S P PNS+
Sbjct: 206 SFRISNSHISPFASGSFSPFATSSPNFLSTSTPAPPNSN 244
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -2
Query: 299 VFASSAFFNLSTKA-GLFPFVSNPRAPNSDLKSTTF 195
+F+ ++ N S+ + LFP + P P+S+L +T F
Sbjct: 335 LFSDNSMVNSSSNSFSLFPNATLPNPPSSELLTTPF 370
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 500 HQALEEESTESQPTKDEQVTKE-PNNRSESDEQEDDKAMDTQE 625
+ A EE+ +S P K QV K+ + SE +E K +T++
Sbjct: 165 NSASEEDELDSAPAKKAQVKKKRTKDESEQEEAASPKKNNTKK 207
>SPBC30B4.08 |eri1||double-strand siRNA
ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = +1
Query: 199 VVDLRSELGALGLDTKGNKPALVERLK---KALEAK 297
V ++R L LGL T GNK L R K K LE K
Sbjct: 25 VEEIRIALQELGLSTNGNKEKLKRRWKFREKRLEEK 60
>SPAC1952.07 |rad1||checkpoint clamp complex protein
Rad1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 323
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +2
Query: 512 EEESTESQPTKDEQVTKEPNNRSESDEQEDD 604
EEE ES + + + +PN R +++ +++D
Sbjct: 292 EEEPAESNQSDNNVLRNDPNYRGDAETEDED 322
>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
phosphatidyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.1
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +2
Query: 437 SLQTHLSPFRKKLAVTVMTATHQALEEESTESQPTKDEQVTKEPNNRSESDEQEDDKAMD 616
S Q H PF + + T+ Q L+ EST T++E++ ++ + E +Q K M+
Sbjct: 454 STQHHKHPFLTTIGSSNYTSRSQQLDLESTLVVMTQNEKLKRKFSTEIELIKQH-TKPMN 512
Query: 617 T 619
T
Sbjct: 513 T 513
>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 58 WRFFLS*IFVQIVIELILFK 117
WR+F + +QIVI+ +L+K
Sbjct: 108 WRYFAYLLSLQIVIDFVLYK 127
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 509 LEEESTESQPTKDEQVTKEPNNRSESDEQEDDKAMDTQESTGPDDA 646
LE+ Q + + +E ++ SESDE ED+ DDA
Sbjct: 226 LEDWLGSDQSMETSESEEEESSESESDEDEDEDNKGKIRKRKTDDA 271
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/47 (27%), Positives = 28/47 (59%)
Frame = +2
Query: 497 THQALEEESTESQPTKDEQVTKEPNNRSESDEQEDDKAMDTQESTGP 637
T ++ EEES+ES+ +DE + +N+ + +++ D A +++ P
Sbjct: 238 TSESEEEESSESESDEDE----DEDNKGKIRKRKTDDAKKSRKKRAP 280
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 512 EEESTESQPTKDEQVTKEPNNRSESDEQEDDKAMDTQESTG 634
E++S +S P+K + + N E D++ DD ++ G
Sbjct: 526 EDKSEDSVPSKSSVLEDKHENSVEIDKKADDSLPSNNKTEG 566
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 521 STESQPTKDEQVTKEPNNRSESDEQEDDKAMDTQESTGPDD 643
S ES P K+E+VTK P+ + +++ + P D
Sbjct: 222 SGESLPKKEEEVTKSPSFTLDDSVASNEQTLAQLNIESPVD 262
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 25.0 bits (52), Expect = 9.4
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +2
Query: 467 KKLAVTVMTATH-QALEEESTESQPTKDEQVTKEPNNRSESDEQEDDKAMDTQESTG 634
K L T T + + EEE E + +E+ +E ES+ + +DK D S G
Sbjct: 337 KSLPETQRTTSRIETQEEEIKEEEMEGEEEEEEEEVPNYESENELEDKVGDLSLSLG 393
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 231 ESTQLGPQVHHLHFSRIH 178
E +QLGPQ+ L FS IH
Sbjct: 479 EVSQLGPQLTDLPFSSIH 496
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,318,766
Number of Sequences: 5004
Number of extensions: 42625
Number of successful extensions: 210
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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