Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_L01
         (523 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...    91   1e-19
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...    89   3e-19
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    29   0.56 
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    25   5.2  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    25   6.8  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    25   9.0  

>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score = 90.6 bits (215), Expect = 1e-19
 Identities = 39/67 (58%), Positives = 50/67 (74%)
 Frame = +3

Query: 42  VTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRH 221
           V+VKDV+  K +   AA LK++GK+  P+ +D+VKT   KELAPYDPDW+YVR AAI RH
Sbjct: 4   VSVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARH 63

Query: 222 IYIRSPV 242
           IY+R  V
Sbjct: 64  IYLRKQV 70



 Score = 68.1 bits (159), Expect = 7e-13
 Identities = 31/64 (48%), Positives = 44/64 (68%)
 Frame = +1

Query: 244 GVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRD 423
           GV  + K++GG    G+ PSH    SGS+ RK +QSLE + ++EK  +GGR ++ QG+RD
Sbjct: 71  GVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRD 130

Query: 424 LDRI 435
           LDRI
Sbjct: 131 LDRI 134


>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 89.4 bits (212), Expect = 3e-19
 Identities = 38/67 (56%), Positives = 50/67 (74%)
 Frame = +3

Query: 42  VTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRH 221
           V+VKDV+  + +   AA LK++GK+  P+ +D+VKT   KELAPYDPDW+YVR AAI RH
Sbjct: 4   VSVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARH 63

Query: 222 IYIRSPV 242
           IY+R  V
Sbjct: 64  IYLRKQV 70



 Score = 68.1 bits (159), Expect = 7e-13
 Identities = 31/64 (48%), Positives = 44/64 (68%)
 Frame = +1

Query: 244 GVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRD 423
           GV  + K++GG    G+ PSH    SGS+ RK +QSLE + ++EK  +GGR ++ QG+RD
Sbjct: 71  GVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRD 130

Query: 424 LDRI 435
           LDRI
Sbjct: 131 LDRI 134


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 18  QHKARCVPVTVKDV-EQDKIVKTVAAHLKKTGKVKVPEHMDLVKTA 152
           QH  R VP+  + + E   I K  AA+   T  +K PE +DL+  A
Sbjct: 795 QHGCRAVPLDGRVLCEPTTISKATAANYIMTHLIKNPEELDLILVA 840


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 148 QLASKSWLRMTLIGSMCVVL 207
           +L SKSWL +  +G +C+ L
Sbjct: 359 KLLSKSWLSLEPVGQICISL 378


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 39  PVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKE 164
           P   +D E DKI ++V  HL K  K +  +   L K    KE
Sbjct: 81  PYDHEDEEADKIYQSVEEHLSKRRKSQREKQEQLQKEKYEKE 122


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = -2

Query: 423 VSSTLCGENATT----VLNFLNKLQCLQRLQSLAC 331
           VSS  C E   T     L+ +N ++C+  LQS+ C
Sbjct: 261 VSSKNCFEEPITPRFQALHRINMIECIPELQSVVC 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,050,331
Number of Sequences: 5004
Number of extensions: 39896
Number of successful extensions: 115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)