Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_L01
         (523 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220...    93   1e-19
08_01_0727 + 6567935-6568112,6568197-6568912,6569061-6569162,656...    28   5.2  
08_01_0438 + 3852221-3853207,3853544-3854757,3855258-3855330,385...    28   5.2  
03_02_0901 + 12267042-12267182,12267949-12268095,12268163-122682...    27   6.9  
04_04_1161 + 31374240-31374403,31374495-31374812,31375347-313754...    27   9.1  
01_06_1208 + 35424241-35424370,35424415-35424728,35424782-354249...    27   9.1  

>03_04_0129 +
           17520753-17520842,17521651-17521741,17521887-17522070,
           17522149-17522224
          Length = 146

 Score = 93.1 bits (221), Expect = 1e-19
 Identities = 39/66 (59%), Positives = 52/66 (78%)
 Frame = +3

Query: 45  TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 224
           TVKDV   + VK  +AHLK++GK+++PE +D+VKTARFKEL PYDPDW+Y R A+I R I
Sbjct: 8   TVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKI 67

Query: 225 YIRSPV 242
           Y+R  +
Sbjct: 68  YLRQGI 73



 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 33/64 (51%), Positives = 48/64 (75%)
 Frame = +1

Query: 244 GVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRD 423
           GV    KI+GGR+RNG  P HFC+SSG+I+R  LQ L+ + +++    GGR++T+QGRRD
Sbjct: 74  GVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRD 133

Query: 424 LDRI 435
           LD++
Sbjct: 134 LDQV 137


>08_01_0727 +
           6567935-6568112,6568197-6568912,6569061-6569162,
           6569236-6569547,6569862-6570299
          Length = 581

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 24  KARCVPVTVKDVEQDK-IVKTVAAHLKKTGKVKVPEHMDLVKTAR 155
           ++ C P+  KDVE  K +V   AA + K G +K      LV   R
Sbjct: 194 ESNCSPLRQKDVEGAKAVVAIAAAKVAKGGSIKKTSRKRLVDVGR 238


>08_01_0438 +
           3852221-3853207,3853544-3854757,3855258-3855330,
           3856715-3856843,3857060-3857103,3857186-3857265,
           3857342-3857396,3857712-3857919
          Length = 929

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = +3

Query: 21  HKARCVPVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARF 158
           HKA    VT++ +   + +++    +KK+ K K  +H  ++ + RF
Sbjct: 690 HKALDEVVTLRKIRDQQNLQSCKRPIKKSAKGKDSDHSTIISSTRF 735


>03_02_0901 + 12267042-12267182,12267949-12268095,12268163-12268253,
            12268367-12268485,12268779-12268969,12269440-12269650,
            12270072-12270309,12270944-12271329,12271933-12271956,
            12271984-12272077,12272341-12272525,12273025-12273255,
            12273665-12273730,12273816-12274034,12274764-12275003,
            12275244-12275423,12276269-12276535,12276612-12276815,
            12276896-12277048
          Length = 1128

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 63   QDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIY 227
            +D+I+ +    ++    V+VP + +LV TA    L P D  W  +R  A LR  +
Sbjct: 947  EDRILMSDIVFMRAWVNVEVPTYCNLVTTA----LQPQDETWQGMRTTAELRRAH 997


>04_04_1161 +
           31374240-31374403,31374495-31374812,31375347-31375493,
           31375674-31375754,31375799-31375886,31375999-31376176,
           31376705-31376794,31376795-31376866,31377247-31377257
          Length = 382

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +1

Query: 169 LRMTLIGSMCVVLPSFVIFTFAHLFGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARK-AL 345
           L+++ +  +C+V P+FV F  +  F   +   +  G  R+G    H C  +  I+++  L
Sbjct: 276 LQISSVILVCLVSPAFVDFPLSLDFRTFSDKSLQAGVLRDGYPFKHSCNEAIQISKRIEL 335

Query: 346 QSLEAL 363
            SL  L
Sbjct: 336 SSLATL 341


>01_06_1208 +
           35424241-35424370,35424415-35424728,35424782-35424967,
           35425361-35425523,35425601-35425787,35425875-35426016
          Length = 373

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 391 HRPELSQQASMPPTIAKPCVQYCLMTCRN 305
           H  +  +  + P TIA+  +QYCL TC N
Sbjct: 116 HPTQDPEATNSPFTIAQLQLQYCLHTCTN 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,768,863
Number of Sequences: 37544
Number of extensions: 278715
Number of successful extensions: 691
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)