Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_L01
         (523 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical pr...    85   4e-17
AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal pro...    85   4e-17
AF022982-5|AAB69936.2|  799|Caenorhabditis elegans Hypothetical ...    31   0.66 
Z70680-4|CAA94569.1|  274|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AF000197-4|AAB52899.1|  274|Caenorhabditis elegans Hypothetical ...    28   3.5  

>Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical
           protein T05F1.3 protein.
          Length = 146

 Score = 84.6 bits (200), Expect = 4e-17
 Identities = 37/63 (58%), Positives = 47/63 (74%)
 Frame = +3

Query: 45  TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 224
           ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP DPDWFY R A++ RH+
Sbjct: 6   SIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLARHL 65

Query: 225 YIR 233
           Y R
Sbjct: 66  YFR 68



 Score = 77.4 bits (182), Expect = 6e-15
 Identities = 37/65 (56%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
 Frame = +1

Query: 244 GVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-GRILTTQGRR 420
           G+    K++GG KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG GRIL+ QGR+
Sbjct: 71  GIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRILSKQGRK 130

Query: 421 DLDRI 435
           DLDRI
Sbjct: 131 DLDRI 135


>AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal
           protein S19 protein.
          Length = 146

 Score = 84.6 bits (200), Expect = 4e-17
 Identities = 37/63 (58%), Positives = 47/63 (74%)
 Frame = +3

Query: 45  TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 224
           ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP DPDWFY R A++ RH+
Sbjct: 6   SIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLARHL 65

Query: 225 YIR 233
           Y R
Sbjct: 66  YFR 68



 Score = 77.4 bits (182), Expect = 6e-15
 Identities = 37/65 (56%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
 Frame = +1

Query: 244 GVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-GRILTTQGRR 420
           G+    K++GG KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG GRIL+ QGR+
Sbjct: 71  GIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRILSKQGRK 130

Query: 421 DLDRI 435
           DLDRI
Sbjct: 131 DLDRI 135


>AF022982-5|AAB69936.2|  799|Caenorhabditis elegans Hypothetical
           protein T23B12.4 protein.
          Length = 799

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +3

Query: 183 DWFYVRCAAILRHIYIRSPVWSKDCHQDLWWAQT*WSYTFTFLQVIRQYC 332
           DW +V+CA  + H+ I +P  SKD +   ++A+T       F + + Q C
Sbjct: 384 DW-WVKCAERIYHLCIVTPKTSKDLNYLFYFARTFGQNACVFTRSLLQIC 432


>Z70680-4|CAA94569.1|  274|Caenorhabditis elegans Hypothetical
           protein C25G4.6 protein.
          Length = 274

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 36  VPVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTAR 155
           +PV+ KDV +D +VK +    K T  V+ P+ +D  + A+
Sbjct: 161 IPVSDKDVARDLLVKNIQEKGKVTFVVERPDSIDAKQWAK 200


>AF000197-4|AAB52899.1|  274|Caenorhabditis elegans Hypothetical
           protein T21G5.4 protein.
          Length = 274

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 36  VPVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTAR 155
           +PV+ KDV +D +VK +    K T  V+ P+ +D  + A+
Sbjct: 161 IPVSDKDVARDLLVKNIQEKGKVTFVVERPDSIDAKQWAK 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,660,290
Number of Sequences: 27780
Number of extensions: 238614
Number of successful extensions: 660
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)