Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_K19
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    29   0.73 
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    27   1.7  
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   3.9  
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar...    26   3.9  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    26   5.1  
SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly prot...    26   5.1  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    25   6.8  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    25   9.0  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    25   9.0  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    25   9.0  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    25   9.0  

>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 476 LYKLITKMPKGAVLHAHDTSLLGPDYVLKLT 568
           +YK+  K P   V HAHD S++   Y L+++
Sbjct: 371 VYKVDGKAPVSTVSHAHDNSIVALRYNLRIS 401


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = +2

Query: 212 VFLWLSIIMQAFCNTTHETVKKKRNELFEKELEMMLGRDIVLNENETKVNEIFMKLKTKE 391
           V L+  + +QAF N  H   KKK      K +E+  G  I L+  + K N   ++     
Sbjct: 591 VQLFYEMKLQAFVNANHNAPKKKNLNDSLKSVELE-GNGIKLSSEKGKNNVNKVRNDNAR 649

Query: 392 LDQGF 406
            D GF
Sbjct: 650 FDCGF 654


>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 133 ASHAPGSSLDITTEFRGNKEDANKIYCVLMAEHYNASVL 249
           +S  P  SLD   E+ GN  D + +   L   H + S L
Sbjct: 311 SSSLPTLSLDFKQEYSGNNHDMSGLSSSLSKSHNSTSAL 349


>SPAC27F1.04c |nuf2||spindle pole body protein
           Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = +2

Query: 170 QNFEVIKKMLTKFTVFLW-LSIIMQAFC---NTTHETVKKKRNEL 292
           +NFE+I + L +FTVF   LS  MQ  C    T  + +K  RN L
Sbjct: 70  ENFEIIHESL-RFTVFYQILSQFMQNICFHDFTIQDLLKPDRNRL 113


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -1

Query: 246 NACIIMLSH--KNTVNFVSIFFITSK 175
           N  ++M SH  KN VNF+  FF  S+
Sbjct: 430 NEILVMKSHHHKNIVNFIDTFFYKSE 455


>SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly protein
           Cbp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 283

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 506 GAVLHAHDTSLLGPDYVLKLTYWKDLYI 589
           GA+   +D  +LG D VL  + W++L++
Sbjct: 206 GAIF-GYDQGMLGSDAVLATSVWRNLFV 232


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -1

Query: 114 ISMLLLLERPADSPT*DYSNFKFIL*GQSYFAHGTTL 4
           IS+L  L+ P D P+ DY   K  L  ++Y +HG T+
Sbjct: 766 ISLLGKLKIPTDLPSSDYQRTKRKL--ETYESHGFTM 800


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +2

Query: 239 QAFCNTTHETVKKKRNELFEKELEMMLGRDIVLNENETKVNEIFMKLKTK 388
           QA+ + +   ++KK+ ++ +K+ E+M  R IVL E    V  +    K K
Sbjct: 453 QAWTSESERELEKKKEQVEKKQEELMQTR-IVLEEQVFLVENMIEDAKAK 501


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = +1

Query: 478 VQADYKNAKRC---GASCSRYFTLRSRLRIKIDILER 579
           +Q+DY+ AK+     ASCS + + R R+R ++ + ++
Sbjct: 579 LQSDYEVAKKALEMSASCSYWSSARDRIRSQMVVWDK 615


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = -1

Query: 504 FGIFVISLYSSVFLTSSLYSKKCLDKTKGRLCRNPWSSSFVLSFINISLTLVSFSFN 334
           F  F+ S  + + L+  L SK         L    +S SFV++ + + L  +SF FN
Sbjct: 445 FSTFMTSEDAELVLSYDLMSKSLFISVVSTL---NFSLSFVVAILLVPLQFISFRFN 498


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +2

Query: 470 TELYKLITKMPKGAVLHAHDTSLLGPDYVLKLTY 571
           T++  L    P  +V+H+  ++    +YV KL+Y
Sbjct: 26  TDITSLSVSSPNESVIHSSHSASEADEYVCKLSY 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,486,901
Number of Sequences: 5004
Number of extensions: 48839
Number of successful extensions: 119
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)