Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_K19
(627 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41108-2|AAQ23121.2| 639|Caenorhabditis elegans Tropomodulin pr... 31 0.89
Z98866-19|CAB11556.2| 259|Caenorhabditis elegans Hypothetical p... 30 1.6
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p... 28 4.8
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue... 28 4.8
Z92784-4|CAB07195.1| 180|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z81114-5|CAB03287.1| 300|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z81047-14|CAH04642.1| 357|Caenorhabditis elegans Hypothetical p... 28 6.3
X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit... 28 6.3
AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine... 28 6.3
AL032663-8|CAD89752.1| 321|Caenorhabditis elegans Hypothetical ... 28 6.3
AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine... 28 6.3
AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine... 28 6.3
Z81523-4|CAB04243.1| 824|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z75532-6|CAA99813.2| 330|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z75530-9|CAA99797.2| 330|Caenorhabditis elegans Hypothetical pr... 27 8.3
U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical pr... 27 8.3
AY340594-1|AAQ17186.1| 824|Caenorhabditis elegans SPD-2 protein. 27 8.3
AL117204-4|CAB55144.1| 281|Caenorhabditis elegans Hypothetical ... 27 8.3
>U41108-2|AAQ23121.2| 639|Caenorhabditis elegans Tropomodulin
protein 2, isoform b protein.
Length = 639
Score = 30.7 bits (66), Expect = 0.89
Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Frame = +2
Query: 272 KKKRNELFEKELEMMLGRDIVLNENETKVNEIFMKLKT-KELDQGFRHRRPFVLSKHFFE 448
+KK+ L +++ M D++ E + ++ ++ K K K+L+ HR+ F + + +
Sbjct: 480 EKKKPLLSIQKIREMEKNDVIKKEEDDRLEQLLKKEKEPKKLNN--EHRKLFE-NGNVAQ 536
Query: 449 YKDDVKKTELYKLITKMPKGAVLHAHDTSLLGPD 550
K + ++ + KLI K P + T + GPD
Sbjct: 537 KKPEPRR-HVQKLIAKKPNSILNQTEPTKIEGPD 569
>Z98866-19|CAB11556.2| 259|Caenorhabditis elegans Hypothetical
protein Y49E10.22 protein.
Length = 259
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Frame = +2
Query: 212 VFLWLSIIMQAFCNTTHET-VKKKRNELFEKELEMMLGRDIVLNEN---ETKVNEIFMKL 379
+FL + I+ +A +H T ++K++NE K E M D +L + ET EI +++
Sbjct: 101 IFLKVGIV-EALRRNSHRTGIEKQKNETIRKIFEKMEDPDEILENSIVLETDEVEIDVEV 159
Query: 380 KTKELDQGFRHRRPFV 427
+L F ++P V
Sbjct: 160 VMNKLKFDFTAKKPIV 175
>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
protein T04H1.4b protein.
Length = 1312
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +2
Query: 269 VKKKRNE-LFEKELEMM-LGRDIVLNENETKVNEIFMKLKTKELDQGFRHRR 418
+ +KRNE L + + + L R++ E E K E+ +++ KELDQ HR+
Sbjct: 898 ISQKRNEDLPDAQFKKDDLTRNVSSKEEEKKKAEMEVQMMKKELDQKIFHRK 949
>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical protein
T04H1.4a protein.
Length = 1298
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +2
Query: 269 VKKKRNE-LFEKELEMM-LGRDIVLNENETKVNEIFMKLKTKELDQGFRHRR 418
+ +KRNE L + + + L R++ E E K E+ +++ KELDQ HR+
Sbjct: 884 ISQKRNEDLPDAQFKKDDLTRNVSSKEEEKKKAEMEVQMMKKELDQKIFHRK 935
>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
ceRAD50 protein.
Length = 1298
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +2
Query: 269 VKKKRNE-LFEKELEMM-LGRDIVLNENETKVNEIFMKLKTKELDQGFRHRR 418
+ +KRNE L + + + L R++ E E K E+ +++ KELDQ HR+
Sbjct: 884 ISQKRNEDLPDAQFKKDDLTRNVSSKEEEKKKAEMEVQMMKKELDQKIFHRK 935
>Z92784-4|CAB07195.1| 180|Caenorhabditis elegans Hypothetical
protein F31C3.5 protein.
Length = 180
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +2
Query: 185 IKKMLTKFTVFLWLSIIMQAFCNTTHETVKKKRNELFEKELEMMLGRDI 331
+KK+LT T L+ + F +H V+ R ++FE E L +DI
Sbjct: 72 LKKILTSETESQGLAKLPDHFFEISHMLVRDAREDIFEVEAVKSLVQDI 120
>Z81114-5|CAB03287.1| 300|Caenorhabditis elegans Hypothetical
protein T04D3.5 protein.
Length = 300
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 116 RFLCCFCWSGQPTRRLKT 63
R +C FC+ QPT RL T
Sbjct: 141 RMVCSFCYRAQPTHRLYT 158
>Z81047-14|CAH04642.1| 357|Caenorhabditis elegans Hypothetical
protein C41G6.16 protein.
Length = 357
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 267 VSWVVLQNACIIMLSHKNTVNFVSIFFITSK 175
+S++ NA I L HKN + + SIF + K
Sbjct: 96 LSFISEMNAIITYLDHKNCIGYTSIFDLVFK 126
>X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit of
nicotinic acetylcholinereceptor protein.
Length = 498
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = -2
Query: 167 VISSDDPGAWEAEXLDGRFLCCFCWSGQPTRRLKTTLILNLFYKDSRTSHMAP 9
++S P EA L G F C C + T +LNL Y+ T M P
Sbjct: 277 IVSEMSPPTSEAVPLLGIFFTC-CMIVVTASTVFTVYVLNLHYRTPETHDMGP 328
>AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine
receptor (57.1 kD)alternative variant 1 protein.
Length = 498
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = -2
Query: 167 VISSDDPGAWEAEXLDGRFLCCFCWSGQPTRRLKTTLILNLFYKDSRTSHMAP 9
++S P EA L G F C C + T +LNL Y+ T M P
Sbjct: 277 IVSEMSPPTSEAVPLLGIFFTC-CMIVVTASTVFTVYVLNLHYRTPETHDMGP 328
>AL032663-8|CAD89752.1| 321|Caenorhabditis elegans Hypothetical
protein Y75B12B.10 protein.
Length = 321
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 267 VSWVVLQNACIIMLSHKNTVNFVSIFFITSK 175
+S++ NA I L HKN + + SIF + K
Sbjct: 71 LSFISEMNAIITYLDHKNCIGYTSIFDLVFK 101
>AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform b protein.
Length = 480
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = -2
Query: 167 VISSDDPGAWEAEXLDGRFLCCFCWSGQPTRRLKTTLILNLFYKDSRTSHMAP 9
++S P EA L G F C C + T +LNL Y+ T M P
Sbjct: 277 IVSEMSPPTSEAVPLLGIFFTC-CMIVVTASTVFTVYVLNLHYRTPETHDMGP 328
>AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform a protein.
Length = 498
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = -2
Query: 167 VISSDDPGAWEAEXLDGRFLCCFCWSGQPTRRLKTTLILNLFYKDSRTSHMAP 9
++S P EA L G F C C + T +LNL Y+ T M P
Sbjct: 277 IVSEMSPPTSEAVPLLGIFFTC-CMIVVTASTVFTVYVLNLHYRTPETHDMGP 328
>Z81523-4|CAB04243.1| 824|Caenorhabditis elegans Hypothetical
protein F32H2.3 protein.
Length = 824
Score = 27.5 bits (58), Expect = 8.3
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -1
Query: 249 QNACIIMLSHKNTVNFVSIFFITSKFCCYIKRRSRSMGGGTP*RTISMLL 100
QNA + ++ NT + SI S I R SR+ GGG ++S ++
Sbjct: 381 QNASMADATNSNTASMTSILSTISTARTDISRSSRNHGGGFSNTSVSTVI 430
>Z75532-6|CAA99813.2| 330|Caenorhabditis elegans Hypothetical
protein C47E8.2 protein.
Length = 330
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 200 TKFTVFLWLSIIMQAFCNTTHETVKKKRN 286
T F V +WLS+++ +T TV +RN
Sbjct: 195 TMFNVLIWLSVVIVTLTSTIATTVYLQRN 223
>Z75530-9|CAA99797.2| 330|Caenorhabditis elegans Hypothetical
protein C47E8.2 protein.
Length = 330
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 200 TKFTVFLWLSIIMQAFCNTTHETVKKKRN 286
T F V +WLS+++ +T TV +RN
Sbjct: 195 TMFNVLIWLSVVIVTLTSTIATTVYLQRN 223
>U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical
protein B0416.1 protein.
Length = 1203
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +2
Query: 293 FEKELEMMLGRDIVLNENETKVNEIFMKLKTKELDQGFRHRRPFVLSKHFFEYKDDVKKT 472
F++E + +D +L + + K EI KL+ + + R V KH + + V K
Sbjct: 80 FDEEDDKEASKDRILKKIQQK-KEIIQKLRGQPWYMKRKRRTLKVAQKHLQQQEAKVSKA 138
Query: 473 ELYK 484
LYK
Sbjct: 139 RLYK 142
>AY340594-1|AAQ17186.1| 824|Caenorhabditis elegans SPD-2 protein.
Length = 824
Score = 27.5 bits (58), Expect = 8.3
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -1
Query: 249 QNACIIMLSHKNTVNFVSIFFITSKFCCYIKRRSRSMGGGTP*RTISMLL 100
QNA + ++ NT + SI S I R SR+ GGG ++S ++
Sbjct: 381 QNASMADATNSNTASMTSILSTISTARTDISRSSRNHGGGFSNTSVSTVI 430
>AL117204-4|CAB55144.1| 281|Caenorhabditis elegans Hypothetical
protein Y116A8C.11 protein.
Length = 281
Score = 27.5 bits (58), Expect = 8.3
Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 11/139 (7%)
Frame = +2
Query: 167 QQNFEVIKKMLTKFTV----FLWLSIIMQAFCNTTHETVKKKRNELFEKELEMMLGRDIV 334
QQNF+ IKK+L F + I++ + + VK+++N ++ L + +
Sbjct: 28 QQNFDNIKKILANFEKENENLADENEILKTRIASLEKDVKQEKN---ATKMAKSLNEETI 84
Query: 335 LNENETKVNEIFMKLKTKELDQGFRHRRPFVLSKHFFE--YKDDVK---KTELYKLIT-- 493
NE ++E ++ K+ + +LSK+ E Y +D + + E Y LIT
Sbjct: 85 ---NELTLSEDLIESLKKQFQASKIELKEEILSKNKVEKDYSNDKRYFLEREQYLLITME 141
Query: 494 KMPKGAVLHAHDTSLLGPD 550
M G + H T ++ D
Sbjct: 142 SMESGKLEHEQQTEIMNKD 160
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,807,199
Number of Sequences: 27780
Number of extensions: 272054
Number of successful extensions: 791
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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