Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_K14
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    35   0.010
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    29   0.48 
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    27   1.9  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    27   2.5  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    27   2.5  
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    26   3.4  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    26   3.4  
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M...    26   4.4  
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    26   4.4  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    25   5.9  
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18...    25   7.7  

>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 34.7 bits (76), Expect = 0.010
 Identities = 22/76 (28%), Positives = 37/76 (48%)
 Frame = +1

Query: 295 ERAACNDEYHLSEYVKEEIGWRTADKIFDIKRTFKNAVELGASRGYVSRHFLPDSVEKVT 474
           E     +EY   E++K  +  RT D+++DI R  +  V  G     V +H L    +K+ 
Sbjct: 370 EEEPTTEEYE-EEFLKTYVP-RTLDEVYDIDRDTE-IVNAGGVNSLVYKHLLNTDFQKLD 426

Query: 475 LCDTSRTHLDKAIVGE 522
           L DT++   D+ +  E
Sbjct: 427 LNDTTKNQNDQILPNE 442


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 14/127 (11%)
 Frame = +1

Query: 166 AKNIQADIRNIVQNSSYAAKQKTASSIYRTMNIF-DR---------KTKMIQRERAACND 315
           A+N+Q D+    + S    K +  + +Y + N+F D+         +TK++  ERA  ++
Sbjct: 360 AENVQGDLIFTCEISLTVLKHEIRTKLYNSNNVFLDKGQKGVISNIQTKILNFERAIPSE 419

Query: 316 EYHLSEYVKEEIGWRTADKIFDIKRTFKNA---VELGASRGYVSRHFLPDSVEKVTLC-D 483
             H  E +K   G    +++  IK+ F  A   + L      +  +   DS+E   +C  
Sbjct: 420 MKHYFEILKAGNG--LPEELDIIKQHFFTACVEIYLSYCNTLIYLYLADDSIEGSKICLS 477

Query: 484 TSRTHLD 504
           T+R  +D
Sbjct: 478 TARAAID 484


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +1

Query: 256 MNIFDRKTKMIQRERAACNDEYHLSEYVKEE--IGWRTADKIFDIKRTFKNAVEL 414
           M I + K  ++QR+     DE  +SE  +EE  +  +     F++    K A+EL
Sbjct: 658 MEILNDKISVLQRQLTDVKDELDVSEEEREEAIVAGQKLSASFELMSNEKQALEL 712


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 437 DTYPREAPSSTAFLNVLLMSNILSAVR 357
           D YPR  P STA L+V L+S + S  R
Sbjct: 580 DDYPRAQPPSTAELHVDLLSWMTSFTR 606


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 437 DTYPREAPSSTAFLNVLLMSNILSAVRQPISS 342
           +T   E PSS + +NV +++ + S  RQ ISS
Sbjct: 156 NTASHEVPSSKSDVNVQMLARLKSKSRQKISS 187


>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 193 FVYLPVYFLHSIPIKNDVNLD 131
           F+Y P+Y +H  PI +++NL+
Sbjct: 48  FLY-PIYLIHGQPIDDEINLE 67


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 141 TSFFIGIECKKYTGRYTKHRSK*FV 215
           +SF++G+ CK Y     KH  K +V
Sbjct: 77  SSFYLGVICKLYEKAIDKHSGKKYV 101


>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 556

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -2

Query: 564 QNFPHPLSSFHMDALTNYCLIEMSSGCVTQCHLL 463
           +NF   +  FH+D    Y  +E  SG +   H L
Sbjct: 305 ENFQPSMERFHVDPTGKYIALEGRSGHINLLHAL 338


>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 344 SLTYSDKWYSSLQAALSLCIILV-FLSNIFIVRY 246
           S+  S  W+ +  + LS+C + + FL+ IF  R+
Sbjct: 78  SINTSRSWFRAFLSFLSICFLFISFLNFIFSTRF 111


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 337 VKEEIGWRTADKIFDIKRTFKNAVELGASR 426
           VKE I  R  + + D+    KNAV  G +R
Sbjct: 315 VKESIELRPEEAVIDVDELDKNAVLFGGTR 344


>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -2

Query: 288 YHLSFPIKYIHRSVYRTCSLLFCCIRTILNDVSYI 184
           Y+LSF I +   S++ +  +LF   +++L+ + +I
Sbjct: 9   YNLSFFISFTFSSIFFSSLILFLVYKSVLSKLFFI 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,187,645
Number of Sequences: 5004
Number of extensions: 42147
Number of successful extensions: 118
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)