Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_K14
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   0.70 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   8.6  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -3

Query: 359 RQPISSLTYSDKW--YSSLQAALSLCIILVFL-SNIF 258
           R P   L Y+  +  YSSL +    CII+VFL  NIF
Sbjct: 331 RTPDQCLFYNTDFIIYSSLSSFYIPCIIMVFLYYNIF 367


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = +3

Query: 87  WEKSNKANKNALLTVSKFTSFFIGIECKKYTGRY 188
           W +  +  K   + +  F S+ IG+ C    G Y
Sbjct: 407 WPRLLRKRKELFIAIVCFVSYLIGLFCITEGGMY 440


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = +3

Query: 87  WEKSNKANKNALLTVSKFTSFFIGIECKKYTGRY 188
           W +  +  K   + +  F S+ IG+ C    G Y
Sbjct: 460 WPRLLRKRKELFIAIVCFVSYLIGLFCITEGGMY 493


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 531 MDALTNYCLIEMSSGCVTQC 472
           +DAL N  + +   G +TQC
Sbjct: 162 LDALRNTSIAKSEFGGITQC 181


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,920
Number of Sequences: 438
Number of extensions: 2938
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)