Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_K13
         (350 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...    76   1e-15
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo...    27   1.1  
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    26   1.5  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    26   1.5  
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    24   6.0  
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc...    24   6.0  
SPCC613.03 |||conserved fungal protein|Schizosaccharomyces pombe...    24   7.9  

>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score = 76.2 bits (179), Expect = 1e-15
 Identities = 32/57 (56%), Positives = 45/57 (78%)
 Frame = +3

Query: 87  ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFF 257
           E+TFI VKPD VQRGL+G II +FE KG+KL  LKF+ PS +L+++HY++   +PF+
Sbjct: 4   EQTFIAVKPDAVQRGLIGYIISKFELKGYKLRALKFLVPSRDLVEEHYAEHKGKPFY 60


>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = -1

Query: 218 EKFF*WPYE--FQTD*FEAFLFETFNNGAHKTTLYTIRLNHNKSTLTLFRHHEILXTC 51
           ++F  W Y+  ++ D     L ET N    K    T+RL H    L+LF    +L TC
Sbjct: 283 DQFTDWLYQRWYEKDKLIDTLLETGNFPGPKKLHTTVRLKHRLEILSLF---SVLFTC 337


>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
 Frame = -1

Query: 296 PELNVTFXXEPRGKERPGCQIAVVLLEK----FF*WPYEFQTD 180
           P +N TF    R  + PG   ++  LEK     F +PY F  D
Sbjct: 41  PRMNATFVMLARNSDLPGVVSSINSLEKHFNRHFNYPYTFLND 83


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 172 KPFFSKRSIMVPTRPRCTPSGLT 104
           KPF +KRS ++P RP  T   L+
Sbjct: 512 KPFVNKRSKVLPLRPSVTHDNLS 534


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -2

Query: 175 LKPFFSKRSIMVPTRPRCTPSGLTIIKVRSRCSAIMKYXXRALINY 38
           ++P+F K + +    P+      T + V+SRC  +  Y   +LI +
Sbjct: 161 VRPYFYKHADLKQLCPKWNQYLETCVLVQSRCFYVNSYYGLSLIPF 206


>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 313

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -1

Query: 167 FLFETFNNGAHKTTLYTIRLNHNKSTLTLFR 75
           + ++T NNG +KT   T    + K+   +F+
Sbjct: 174 YFYDTVNNGVYKTGFATTAEAYEKNVRVVFQ 204


>SPCC613.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 189

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 169 PFFSKRSIMVPTRPRCTPSG 110
           PF  K  ++V    +C PSG
Sbjct: 71  PFVKKNEVLVDVLKKCDPSG 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,314,760
Number of Sequences: 5004
Number of extensions: 23377
Number of successful extensions: 57
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)