Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_K13
         (350 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   5.6  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    20   7.4  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            20   7.4  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    20   9.8  

>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -2

Query: 130 PRCTPSGLTIIKVRSRCSAIMK 65
           P C P  +     R RCS+ ++
Sbjct: 41  PGCVPKPIPSYACRGRCSSYLQ 62


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 110 LNHNKSTLTLFRHHEI 63
           LNH  S++TL+R+  +
Sbjct: 89  LNHKFSSVTLYRNKTV 104


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 168 GFKLVGLKFVWPSE 209
           GF++   K +WPS+
Sbjct: 203 GFRVDAAKHMWPSD 216


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 196 TNFKPTSLKPFFSKRSIMVPTRPRC 122
           T   P S+K   +   ++VP++P C
Sbjct: 387 TEENPKSIKSGDAAIVMLVPSKPMC 411


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,806
Number of Sequences: 438
Number of extensions: 1667
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)