Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_K11
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    29   0.78 
SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual    27   3.1  
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom...    27   3.1  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    25   7.3  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    25   7.3  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    25   7.3  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   7.3  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   9.6  
SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.6  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    25   9.6  

>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
 Frame = +3

Query: 432  WIYFLAIALSTIFHELGHALAAAQEDVQIIAVGVYV-FTIIPVAFVDLNTDQL----KNL 596
            W Y   I L+T+FH   + ++ AQE  +++   +Y  + +I  +F+ +   QL    KN+
Sbjct: 1171 WYYAGIIFLNTLFHHYEYVMSIAQEVRKLVDGKLYERYYLITRSFIGVAALQLLFYKKNI 1230

Query: 597  AVTKRLRIYCAGVW 638
            +  +R ++     W
Sbjct: 1231 SEFEREKVEDVAHW 1244


>SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 525 VGVYVFTIIPVAFVDLNTDQLKNL 596
           +  YV TI+P  F   NT ++KNL
Sbjct: 204 IDAYVVTIVPKIFSCSNTTEIKNL 227


>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 392 SNAPWYKYPDIRLLDLFSSYS 454
           S  P YK+PD+   DL +SYS
Sbjct: 133 SYRPDYKFPDVIFSDLLTSYS 153


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 653 NCNIMPHSSTVNPQSFGDS 597
           +CN + H+S ++PQ +G S
Sbjct: 623 SCNAVSHTSMMHPQEYGGS 641


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 383 RSQSNAPWYKYPDIRL 430
           +++ + PWYKY D R+
Sbjct: 470 KTEKDGPWYKYDDTRV 485


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +3

Query: 372 NNVPEVKAMLPGINIPTSDFWIYFLAI 452
           N+VPE+  +LP +++P    + YF+ +
Sbjct: 596 NSVPELLDLLPKVDLPKDRNFQYFMGL 622


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 69  SSIVLAFYTVIWFFDSFFKSCMHYPYYAFLEGT 167
           S I +   +V W+F  +    ++ P + +LEGT
Sbjct: 425 SRIWILHISVFWYFTVYNSPTIYTPNFHYLEGT 457


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 293 YKNVTAREPFSEYSRQILTPSIKASVK 213
           ++N+ AR P   YS+ + TP + +S K
Sbjct: 754 WRNIFARMPKRIYSKILCTPEVDSSYK 780


>SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 177

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +3

Query: 348 HFYDTIQLNNVPEVKAMLP 404
           ++Y+T ++NN PE+K+  P
Sbjct: 3   YYYETEEVNNNPELKSNFP 21


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 567 DLNTDQLKNLAVTKRLRIYCAGVWHNIAI 653
           D NTD L + A       Y AG+W N A+
Sbjct: 715 DFNTDYLDDGASRAWYLAYAAGLWANDAV 743


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,621,832
Number of Sequences: 5004
Number of extensions: 54646
Number of successful extensions: 143
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)