Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_K11
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    26   0.28 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          26   0.36 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.48 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.48 
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   4.5  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 264 KWFTCGYILVIWIFLPFAIW 323
           +W   G +L++WI   F IW
Sbjct: 173 RWELAGTLLLVWILCYFCIW 192


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +1

Query: 190 TFLGRQLLLTDAFIDGVRICLEYSENGSRAVTFL*SGY-SCLSLYGLCSH 336
           T +  QLL T+AF+D    C E S    + V    S Y   L L   C H
Sbjct: 23  TSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKH 72


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 264 KWFTCGYILVIWIFLPFAIW 323
           +W   G + V+WI   F IW
Sbjct: 206 RWELAGTLAVVWIMCYFCIW 225


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 264 KWFTCGYILVIWIFLPFAIW 323
           +W   G + V+WI   F IW
Sbjct: 259 RWELAGTLAVVWIMCYFCIW 278


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +2

Query: 164 NGLKIWNTELFL 199
           NG++IWN ++F+
Sbjct: 54  NGMQIWNDKVFI 65



 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 161 RNGLKIWNTELFLDDNCF 214
           RNG+  W+T   L+ N F
Sbjct: 318 RNGIACWDTNTELNPNTF 335


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,579
Number of Sequences: 438
Number of extensions: 3727
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)