Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_K10
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...   153   8e-38
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AF036706-9|AAK39281.1|  681|Caenorhabditis elegans Hypothetical ...    27   8.8  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    27   8.8  

>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score =  153 bits (372), Expect = 8e-38
 Identities = 72/130 (55%), Positives = 98/130 (75%), Gaps = 1/130 (0%)
 Frame = +2

Query: 131 KIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMP 310
           K++K+ G      E  +SQAL++LETN D+++QL+ELYI   KE+EL NK +IIIYVP+P
Sbjct: 7   KLLKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVP 66

Query: 311 KLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRV-ANKQKRPRSRTLTSVY 487
           +LKAF KI   LVRELEKKF G+ ++ +  R+ILPKP   ++    KQKRPRSRTLT+V+
Sbjct: 67  QLKAFHKIHPALVRELEKKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVH 126

Query: 488 DAILEDLVFP 517
           DA L++LV+P
Sbjct: 127 DAWLDELVYP 136



 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 29/45 (64%), Positives = 37/45 (82%)
 Frame = +3

Query: 519 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLT 653
           AE+VG+RIRVKLDG ++ KVHLDK+ QT + HK+  F SVY+KLT
Sbjct: 137 AEVVGRRIRVKLDGKKVYKVHLDKSHQTNVGHKIGVFASVYRKLT 181


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 195 SNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCR 305
           S+SK T      F SF  Q ++K  YT  S SSS  R
Sbjct: 376 SSSKKTTKEDDFFDSFETQPVQKSRYTASSSSSSTSR 412


>Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical
           protein F45H11.3 protein.
          Length = 738

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -3

Query: 217 VGVGFEFDQRLRDRGLEGIRLSTARFDDL 131
           V VGFE   RLRD+GL   +LS   +D L
Sbjct: 522 VEVGFENWIRLRDKGLSHSQLSCQLYDTL 550


>AF036706-9|AAK39281.1|  681|Caenorhabditis elegans Hypothetical
           protein T07A9.9a protein.
          Length = 681

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +2

Query: 428 KTRVANKQKRPRSRTLTSVYDAILEDLVFPG*DRRQAH 541
           K ++  K K  RSR+L++V  A  ++L FP  + ++AH
Sbjct: 599 KPQLGKKMKVGRSRSLSAVRPAPRDELAFPD-EEKRAH 635


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
           family protein 5 protein.
          Length = 938

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 589 LSKCTLMSCEPSNLTLMRLPTISAREDQVLEDSI 488
           L KC L + EP  L L  +  +  R+DQ+  D I
Sbjct: 167 LKKCLLSTQEPLTLLLRNMMEVGQRKDQLGADEI 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,296,665
Number of Sequences: 27780
Number of extensions: 283890
Number of successful extensions: 831
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)