Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_J19
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 173 1e-43
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 163 8e-41
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 148 4e-36
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 37 0.012
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 37 0.012
07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726... 31 0.80
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264... 31 0.80
07_03_1414 - 26403361-26403969 28 7.4
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 28 7.4
06_01_0820 + 6202348-6203313 27 9.8
05_03_0573 - 15635338-15635502,15637573-15637632,15637776-15638033 27 9.8
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 173 bits (421), Expect = 1e-43
Identities = 85/154 (55%), Positives = 103/154 (66%)
Frame = +2
Query: 191 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 370
NPLFEKRPK F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLD
Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 81
Query: 371 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRXNTIRSGTNTVTKLVE 550
K A LFK+L KYRPE + ++ G N VT L+E
Sbjct: 82 KNLATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIE 140
Query: 551 KXKAQLVVIAHDVDPIXLVLFLPALCRKMGVPYC 652
+ KAQLVVIAHDVDPI LV++LPALCRKM VPYC
Sbjct: 141 QSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYC 174
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 163 bits (397), Expect = 8e-41
Identities = 81/151 (53%), Positives = 100/151 (66%)
Frame = +2
Query: 191 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 370
NPLFEKRPK F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLD
Sbjct: 6 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 65
Query: 371 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRXNTIRSGTNTVTKLVE 550
K A LFK+L KYRPE + ++ G N VT L+E
Sbjct: 66 KNLATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIE 124
Query: 551 KXKAQLVVIAHDVDPIXLVLFLPALCRKMGV 643
+ KAQLVVIAHDVDPI LV++LPALCRKM +
Sbjct: 125 QSKAQLVVIAHDVDPIELVVWLPALCRKMEI 155
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 148 bits (358), Expect = 4e-36
Identities = 77/154 (50%), Positives = 99/154 (64%)
Frame = +2
Query: 191 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 370
NPLFEKRPK F IG + P +DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQFT+TLD
Sbjct: 23 NPLFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLD 82
Query: 371 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRXNTIRSGTNTVTKLVE 550
K ++L++ + E + ++ G + VT L+E
Sbjct: 83 KNLGCQKERLLKRAQAEA-----------------EGKTVEAKKPIVVKYGLDHVTYLIE 125
Query: 551 KXKAQLVVIAHDVDPIXLVLFLPALCRKMGVPYC 652
+ KAQLVVIAHDVDPI LV++LPALCRKM +PYC
Sbjct: 126 QSKAQLVVIAHDVDPIELVVWLPALCRKMEIPYC 159
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 37.1 bits (82), Expect = 0.012
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +2
Query: 512 IRSGTNTVTKLVEKXKAQLVVIAHDVDPIXLVLFLPALCRKMGVPY 649
++ G V K + + + L +IA ++ PI ++ +P LC + +PY
Sbjct: 45 LKRGVKEVVKSIRRGQKGLCIIAGNISPIDVITHVPILCEEANIPY 90
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 37.1 bits (82), Expect = 0.012
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 512 IRSGTNTVTKLVEKXKAQLVVIAHDVDPIXLVLFLPALCRKMGVPY 649
++ G V K + + L VIA ++ PI ++ +P LC + +PY
Sbjct: 45 LKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANIPY 90
>07_01_0875 -
7265529-7265588,7265681-7265746,7266008-7266293,
7267138-7267142
Length = 138
Score = 31.1 bits (67), Expect = 0.80
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +2
Query: 521 GTNTVTKLVEKXKAQLVVIAHDVDPIXLVLFLPALCRKMGV 643
G K +EK AQL V+A D D V + ALC + V
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNV 81
>07_01_0360 +
2646279-2646283,2647113-2647398,2648043-2648108,
2648199-2648258
Length = 138
Score = 31.1 bits (67), Expect = 0.80
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +2
Query: 521 GTNTVTKLVEKXKAQLVVIAHDVDPIXLVLFLPALCRKMGV 643
G K +EK AQL V+A D D V + ALC + V
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNV 81
>07_03_1414 - 26403361-26403969
Length = 202
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -1
Query: 298 LDADILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHNFLGLNLFD 161
L A + P + G++ + + +T + L P LEE + GL L+D
Sbjct: 77 LSAAVSNPGFFFGRMVVFNDPVTEGRALPPSLEETVVRAQGLYLYD 122
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 289 PHPASEGCTSASSESAPSDQP 351
P PA E +A+ E+APSD P
Sbjct: 53 PQPAPEEAPAAAEEAAPSDDP 73
>06_01_0820 + 6202348-6203313
Length = 321
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -3
Query: 341 EGALSDDAEVQPSDAGCGYTWAILQIWTSHELAECPDQ 228
EG S V SDAG GY +A W + +CP Q
Sbjct: 170 EGFCSVRCGVHGSDAGAGYAYA----WVGNAERQCPGQ 203
>05_03_0573 - 15635338-15635502,15637573-15637632,15637776-15638033
Length = 160
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +3
Query: 162 SKRLSPRKL*ILS---SRRGQRTLLLVRAFSQLVTCPD 266
S L PR L +L +RRG R L +VRA S V PD
Sbjct: 13 SPSLGPRSLRLLRGALARRGSRRLGVVRAASAEVAAPD 50
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,682,265
Number of Sequences: 37544
Number of extensions: 282292
Number of successful extensions: 804
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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