Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_J18
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.4  
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17...    27   3.1  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    26   5.5  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    25   7.2  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    25   9.5  

>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 294 TKLWQISSIIINPLVYYDSSIIFTSTEENKIL 199
           +K W  +S++++PL +  S I+F      KI+
Sbjct: 215 SKCWAFTSLLVDPLHFMFSQIVFEDLSGKKIM 246


>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 268

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +3

Query: 318 IKNPVLSMDSKALSSAITKFSAKFCNELDKKKNVVSSPLSAEYLLALITLGTTD 479
           I++P+L+        +I K++A+  NEL       S PL AE+     ++G  D
Sbjct: 48  IRSPILTRQPSEFEKSIYKYNAELWNEL-------SDPLPAEFYFKKGSVGEKD 94


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 336 SMDSKALSSAITKFSAKFCNELDKKKNVVS 425
           S DSK+L   +  F++K C E+DKK  +++
Sbjct: 10  SCDSKSLG--VDDFTSKRCREIDKKALLIT 37


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 205 NSITTGTIEVVVPT 164
           N  T+GT+EVV+PT
Sbjct: 218 NGTTSGTVEVVIPT 231



 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 205 NSITTGTIEVVVPT 164
           N  T+GT+EVV+PT
Sbjct: 253 NGTTSGTVEVVIPT 266



 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 205 NSITTGTIEVVVPT 164
           N  T+GT+EVV+PT
Sbjct: 393 NGTTSGTVEVVIPT 406


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +3

Query: 324 NPVLSMDS--KALSSAITKFSAKFCNELDKKKNVVSSPLSAEYLLALITLGTTDPAHEEL 497
           NP +S+D   KAL S  +   +   N      NV SSP      L+ +    TD + +E 
Sbjct: 255 NPEISLDEPIKALPSTTSDAPSSLLNT-----NVSSSPSKFRKFLSSVIPAKTDLSAKES 309

Query: 498 LTS 506
           LTS
Sbjct: 310 LTS 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,440,142
Number of Sequences: 5004
Number of extensions: 48092
Number of successful extensions: 159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)