Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_J18
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0011 - 7337618-7338496,7338596-7338991 29 3.2
02_04_0632 + 24614659-24615528,24615636-24616133 29 3.2
01_01_1157 - 9203448-9203560,9204725-9204768,9205345-9205433,920... 29 3.2
02_05_0997 + 33382756-33382861,33383070-33383161,33383936-333841... 29 4.3
11_02_0012 - 7346282-7347136,7347234-7347593 28 5.6
03_05_0294 + 22855503-22855946,22856346-22856399 27 9.9
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 27 9.9
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69... 27 9.9
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 399 LDKKKNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGITDDDTI 533
+ KN+V SP S LAL+ G +ELL LG D +
Sbjct: 27 VSSNKNLVFSPASLYAALALVAAGARGTTLDELLALLGAASLDDL 71
>02_04_0632 + 24614659-24615528,24615636-24616133
Length = 455
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Frame = -2
Query: 523 SSVIPRLVNSSSCAGSVVPKVINASKYSA----DNGDD 422
++V P L+ +G+ PK+ NAS Y+A DNGDD
Sbjct: 71 TAVDPSLMGFVLISGTQFPKINNASAYAAADPGDNGDD 108
>01_01_1157 -
9203448-9203560,9204725-9204768,9205345-9205433,
9205565-9205609,9205805-9205912,9206003-9206088,
9206492-9206579,9206725-9206910,9207181-9207256,
9207332-9207381,9207715-9207777,9207882-9207962,
9208028-9208130,9208246-9208348,9208489-9208549,
9209059-9209154,9209185-9209225,9209848-9209922,
9210412-9210562
Length = 552
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = -2
Query: 580 PFIDF--NFDDTAENDERIVSSSVIPRLVNSSSCAGSVVPKVINASKYSADNG 428
PF+ F +DD +++R V+S I +SCAGSV+ + ++ +K D G
Sbjct: 84 PFLYFMVQYDDILFHEKRRVTSVTIDFTFGLNSCAGSVI-RDLHIAKQEEDIG 135
>02_05_0997 +
33382756-33382861,33383070-33383161,33383936-33384175,
33384820-33384900,33384974-33385113,33385462-33385622,
33385700-33385800,33385895-33385969,33386218-33386488,
33386657-33386697,33386922-33387004,33387100-33387189,
33387721-33387825,33388023-33388161,33388467-33388670,
33388837-33388908,33389189-33389273,33389374-33389480
Length = 730
Score = 28.7 bits (61), Expect = 4.3
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +3
Query: 309 LLEIKNPVLSMDSKALSSAITKFSAKFCNELDKKKNVVSSPLSAEYLLALITLGT-TDPA 485
L+E+ LSM +K SSA+ F+ KF + L S+E + GT T PA
Sbjct: 237 LVEVVRSSLSMMAKQWSSAMNLFNEKF-SALPSLIAAHGMESSSEDEFMSLLFGTRTSPA 295
Query: 486 -HEELLTSLG 512
H+ L++SLG
Sbjct: 296 LHQFLVSSLG 305
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 402 DKKKNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGITDDDTI 533
+ +NVV SP+S LAL+ G +EL+ LG D +
Sbjct: 28 NSNRNVVFSPVSLYAALALVASGARGTTLDELVALLGAASLDDL 71
>03_05_0294 + 22855503-22855946,22856346-22856399
Length = 165
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 414 NVVSSPLSAEYLLALITLGTTDPAHEELLTSLGI 515
NV SPLS L+L+ G ++L++ LG+
Sbjct: 45 NVAFSPLSLHVALSLVAAGAGGATRDQLVSLLGV 78
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 411 KNVVSSPLSAEYLLALITLGTTDPAHEELLTSLG 512
+NV SPLS L+L+ G ++L ++LG
Sbjct: 35 RNVAFSPLSLHVALSLVAAGAGGATRDQLASALG 68
>03_01_0085 +
690618-691012,691114-691193,691775-691959,692363-693320,
693391-693518,693951-694010,694113-694163,694704-694821,
694990-695915,695916-697707,697810-697943,698029-698526
Length = 1774
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = -2
Query: 574 IDFNFDDTAENDERIVSSSVIPRLVNSSSCAGSVVPKVINASKYSADNGDDT 419
+D + D E+D+ + + R VN + V P + S S NGD T
Sbjct: 639 VDSHMDPDYESDDEFGNKKAVERSVNWARSDPFVSPVKVKYSNSSQKNGDAT 690
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,172,169
Number of Sequences: 37544
Number of extensions: 251833
Number of successful extensions: 500
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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