Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_J17
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subun...    27   1.8  
SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces...    27   1.8  
SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|...    27   3.1  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   4.1  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   4.1  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    26   4.1  
SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual      25   9.5  
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ...    25   9.5  

>SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subunit
           Rpb9 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 113

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 130 LMSVLFVCVHCEFEGEE 180
           +M++++VCVHC F  EE
Sbjct: 96  MMTLIYVCVHCGFAFEE 112


>SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 356

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 553 EISRSKHCHHDADELIIGGTDAGVNEYPHMVLL 651
           E S SK+      +L + GTD G+NEY +   L
Sbjct: 131 EFSLSKNIIDQLMDLFVKGTDHGINEYANFDFL 163


>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 620 PASVPPMISSSASWWQCLLRLISPVSATPFSHGYTSCS 507
           P ++  +I    SW+ CL++ +   S  PFS G+ S S
Sbjct: 164 PKNLEKLIDVHPSWF-CLMKALWTNSGLPFSKGFRSPS 200


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -1

Query: 618 CIGAANDQLVRVMVAVLTAAYLPGECDALLTRIHELL--LIFNTFVPCLLP 472
           CIG A + +VR+ ++ LTA Y     + +  ++ +LL  L F+  V  LLP
Sbjct: 707 CIGDAFNNMVRLDLSELTALY-----EGMFAKVQDLLKELCFDMNVEKLLP 752


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -1

Query: 618 CIGAANDQLVRVMVAVLTAAYLPGECDALLTRIHELL--LIFNTFVPCLLP 472
           CIG A + +VR+ ++ LTA Y     + +  ++ +LL  L F+  V  LLP
Sbjct: 707 CIGDAFNNMVRLDLSELTALY-----EGMFAKVQDLLKELCFDMNVEKLLP 752


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/64 (23%), Positives = 27/64 (42%)
 Frame = +1

Query: 382 EYVPPSYDYQSNNGDKKCEDVPADLTSPKTGQKAWDKCIEYQEQLVYPCEKGVALTGEIS 561
           E++   +    N    K  D+ + L+ PK+        ++    + Y  +  + LTG  S
Sbjct: 100 EHLVAGFAKSRNESSLKLWDLNSLLSDPKSSPLMQSSTLDGVSSVCYKKDTPLLLTGSTS 159

Query: 562 RSKH 573
           RS H
Sbjct: 160 RSVH 163


>SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 520 YPCEKGVALTGEISRSKHCHHDADELI 600
           Y  EK V L G+  + + C H  D+LI
Sbjct: 170 YAMEKAVKLLGQEIQPEECMHLGDDLI 196


>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 335

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 412 SNNGDKKCEDVPADLTSPKTGQKAWDKCIEY 504
           SN   + C +    L  PKTGQK   +C  Y
Sbjct: 2   SNKLCQLCNERRPALVRPKTGQKICKECFYY 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,631,137
Number of Sequences: 5004
Number of extensions: 52276
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)