Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_J17
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1457 - 30287185-30287287,30287691-30287759,30288212-302883...    28   5.6  
05_05_0332 - 24145999-24146052,24146749-24147117,24147158-24147598     28   5.6  
05_04_0005 + 17063717-17063866,17065737-17065855,17066903-170672...    28   7.5  
08_02_0385 + 16574553-16574885                                         27   9.9  
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892...    27   9.9  

>06_03_1457 - 30287185-30287287,30287691-30287759,30288212-30288351,
            30288447-30288641,30288743-30289363,30289688-30290257,
            30290332-30293638,30293764-30293863,30293978-30295014,
            30295256-30295604,30296299-30296374,30296456-30297022,
            30297094-30297238,30298281-30298405,30298491-30298582,
            30298646-30298828,30298946-30299058,30299499-30299649,
            30299720-30299882
          Length = 2701

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +1

Query: 433  CEDVPADLTS---PKTGQKAWDKCIEYQEQLVYPC 528
            C+ +P + +S    K GQK W +   Y ++++ PC
Sbjct: 1369 CQSLPNESSSCKMSKRGQKLWGRFSSYVKEIIAPC 1403


>05_05_0332 - 24145999-24146052,24146749-24147117,24147158-24147598
          Length = 287

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 517 RAALDIQYICPMPSARSWETSDPPVHPRISCRHCWTG 407
           RA L+ +  CP   AR W  +   + PR +CR  W G
Sbjct: 182 RAPLEPRVRCPYCGARVWSMTAAGLAPRSACR--WLG 216


>05_04_0005 +
           17063717-17063866,17065737-17065855,17066903-17067218,
           17067579-17067722,17067909-17067926,17068853-17068954,
           17069358-17069461,17069543-17069669,17069809-17069961,
           17070261-17070361,17070538-17070739,17071245-17071469
          Length = 586

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +3

Query: 420 WRQEMR--GCTGGSDVSQDRAEGMGQMY*ISRAARVSV*EGRRTHRG 554
           W Q  R  GC+GG    + R  G G+M+  S+A+   V E  R   G
Sbjct: 29  WLQRRRRGGCSGGDGAVEARWRGGGRMWSSSQASTRGVIEVGRVEAG 75


>08_02_0385 + 16574553-16574885
          Length = 110

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/19 (68%), Positives = 13/19 (68%)
 Frame = -1

Query: 282 ERTNLW*FPVSDVVERGLT 226
           ER NLW F V DV  RGLT
Sbjct: 24  ERENLWHFRVQDVGLRGLT 42


>01_06_0565 +
           30287253-30287502,30287522-30289010,30289133-30289277,
           30289679-30289729
          Length = 644

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -2

Query: 638 CGYSLTPASVPPMISSSASWWQCLLRLISPVSATPFSHGYT 516
           C Y L   S P +I     +W  + RL  P +A PF H  T
Sbjct: 579 CSYWL---SHPGVIWGLFGFWCPMARLFGPTAAAPFGHDLT 616


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,941,729
Number of Sequences: 37544
Number of extensions: 373126
Number of successful extensions: 1005
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)