Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_J17
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81115-2|CAB03292.1|  314|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z35663-16|CAA84726.2|  462|Caenorhabditis elegans Hypothetical p...    29   2.2  
U10414-11|AAA19078.1|  187|Caenorhabditis elegans Hypothetical p...    29   2.9  
AF026213-4|AAB71305.2|  458|Caenorhabditis elegans Cell death ab...    29   2.9  
Z81134-5|CAB54316.1|  101|Caenorhabditis elegans Hypothetical pr...    29   3.8  

>Z81115-2|CAB03292.1|  314|Caenorhabditis elegans Hypothetical
           protein T05D4.2 protein.
          Length = 314

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 382 EYVPPSYDYQSNNGDKKCEDVPADLTS-PKTGQKAWDKCIEYQEQ 513
           E++  ++ Y  NN   +C ++  D+ S P+   K  D+C EYQ Q
Sbjct: 43  EHLTSAHSYTKNN-HCQCYEIAVDICSEPRVRVKGLDRCWEYQIQ 86


>Z35663-16|CAA84726.2|  462|Caenorhabditis elegans Hypothetical
           protein T04A8.3 protein.
          Length = 462

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = +1

Query: 400 YDYQSNNGD--KKCEDVPADLTSPKTGQKAWDKCIEYQEQLVYPCEKGVALTGEISRSKH 573
           +D   NN D  KKC D+ A L+S  T ++   K ++     VYP +  +A+     R + 
Sbjct: 295 HDMSMNNDDAEKKCNDMGAHLSSFTTYEEL--KLLDEMILEVYPNDNNIAVWLGAKRREE 352

Query: 574 CHHDADELIIGGTDAGVNE 630
           C  D  +   GG    +++
Sbjct: 353 C-GDLSKNFTGGYSKDIHD 370


>U10414-11|AAA19078.1|  187|Caenorhabditis elegans Hypothetical
           protein F42A10.7 protein.
          Length = 187

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/72 (26%), Positives = 31/72 (43%)
 Frame = -2

Query: 629 SLTPASVPPMISSSASWWQCLLRLISPVSATPFSHGYTSCS*YSIHLSHAFCPVLGDVRS 450
           +L   + P        WWQC    +  ++ATP+         Y IHLS    P++   + 
Sbjct: 25  NLADCAAPNGTDKVMHWWQCSSGPVQFLNATPYDSTGKQYE-YPIHLSQ---PIVVKTQI 80

Query: 449 AGTSSHFLSPLL 414
              +S ++SP L
Sbjct: 81  NNPTSTYVSPNL 92


>AF026213-4|AAB71305.2|  458|Caenorhabditis elegans Cell death
           abnormality protein 8 protein.
          Length = 458

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = -1

Query: 591 VRVMVAVLTAAYLPGECDALLTRIHELLLIFNTFVPCLLP-GLGRRQIR-RYILAFLVAI 418
           V ++V ++   +L        T I +LLL+ NTF+   +P  +     R RY+ A+ V  
Sbjct: 295 VHLLVTLVHVIFLQAIHIDACTHIEKLLLLINTFIHIFIPFNMVEGNTRWRYLTAYSVEF 354

Query: 417 VGLVII 400
           + ++++
Sbjct: 355 IEMMLV 360


>Z81134-5|CAB54316.1|  101|Caenorhabditis elegans Hypothetical
           protein T28D6.9 protein.
          Length = 101

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/27 (37%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = -1

Query: 462 RRQIRRYILAFLV-AIVGLVIIGGWHV 385
           RRQIR+Y++A +V +I  ++++  W +
Sbjct: 50  RRQIRKYVIASIVGSIFWIIVLSAWEI 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,952,372
Number of Sequences: 27780
Number of extensions: 311202
Number of successful extensions: 827
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)