Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_J16
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer... 137 2e-33
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 116 2e-27
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|... 45 8e-06
SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr ... 33 0.036
SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual 32 0.063
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 29 0.59
SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr... 27 1.8
SPBC1347.09 |||hexaprenyldihydroxybenzoate methyltransferase|Sch... 27 2.4
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo... 26 5.5
SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyce... 25 7.3
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.3
SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 25 7.3
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma... 25 7.3
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 25 9.6
SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr ... 25 9.6
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 25 9.6
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar... 25 9.6
>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 137 bits (331), Expect = 2e-33
Identities = 61/110 (55%), Positives = 83/110 (75%)
Frame = +1
Query: 328 GPDKNVTAEEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYKNAMYHNKHLFQGKTVLDIG 507
G K +T++DYYFDSY+H+GIHEEMLKD+VRTL+Y++A+ N HLF+ K VLD+G
Sbjct: 3 GNTKKSADSGLTAKDYYFDSYSHWGIHEEMLKDDVRTLSYRDAIMQNPHLFRDKIVLDVG 62
Query: 508 CGTGILSMFAAKAGATKVLAIECSNIVDYARKIIEANRLDDVIEIIKGKV 657
CGTGILSMF A+AGA V ++ S I+ A +I+E N+L D I +I+GK+
Sbjct: 63 CGTGILSMFCARAGAKHVYGVDMSEIIHKAVQIVEVNKLSDRITLIQGKM 112
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 116 bits (280), Expect = 2e-27
Identities = 57/106 (53%), Positives = 73/106 (68%)
Frame = +1
Query: 340 NVTAEEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYKNAMYHNKHLFQGKTVLDIGCGTG 519
+VT ++ + YYF+SYA IH ML D VRT Y++ +YHNKH+F GKTVLD+GCGTG
Sbjct: 208 SVTPKKADNDSYYFESYAGNDIHFLMLNDSVRTEGYRDFVYHNKHIFAGKTVLDVGCGTG 267
Query: 520 ILSMFAAKAGATKVLAIECSNIVDYARKIIEANRLDDVIEIIKGKV 657
ILSMF AKAGA KV A++ S+I+ A N L D I I+GK+
Sbjct: 268 ILSMFCAKAGAKKVYAVDNSDIIQMAISNAFENGLADQITFIRGKI 313
>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
methyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 271
Score = 45.2 bits (102), Expect = 8e-06
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Frame = +1
Query: 439 LTYKNAMYHNKHLFQGKTVLDIGCGTGILSMFAAKAGATKVLAIECSNI-VDYARKIIEA 615
L + ++ ++ F GK +LDIGCG GILS A+ GA+ V A++ S + ++ A+K
Sbjct: 63 LDFMTEVFRERNCFSGKKILDIGCGGGILSESMARLGAS-VTAVDASPMAIEVAKKHASL 121
Query: 616 NR-LDDVIEIIKGKV 657
+ L+ +E I G V
Sbjct: 122 DPVLNGRLEYIHGSV 136
>SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 247
Score = 33.1 bits (72), Expect = 0.036
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 454 AMYHNKHLFQ-GKTVLDIGCGTGILSMFAAKAGATKVLAIECSNIVDYARKIIEANRLD 627
A Y +H Q G VL++G GTG++S+ AK G+ + + + D R+ N D
Sbjct: 160 AEYIYQHPVQSGMRVLELGAGTGLVSILCAKMGSIVLATDGDTKVCDGVRENARLNNCD 218
>SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 268
Score = 32.3 bits (70), Expect = 0.063
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +1
Query: 475 LFQGKTVLDIGCGTGILS-MFAAKAGATKVLAIECSNI-VDYARKIIE 612
LF +VLDIGC G +S A+ GA+ VL ++ ++ + ARK +E
Sbjct: 33 LFYEASVLDIGCNNGTVSAQIASIFGASFVLGLDIDHVLIQKARKHLE 80
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 29.1 bits (62), Expect = 0.59
Identities = 22/88 (25%), Positives = 37/88 (42%)
Frame = +1
Query: 259 IKMETMDVAQEGTSTVSTPVVENGPDKNVTAEEMTSRDYYFDSYAHFGIHEEMLKDEVRT 438
+K E D+ + G S+ S PVV +N+ EE+ Y G + + DE T
Sbjct: 302 LKSELRDLEKSGGSSNSKPVVVRPKKRNILTEEL--EKYKKSKKVVLGKRKNLENDEEST 359
Query: 439 LTYKNAMYHNKHLFQGKTVLDIGCGTGI 522
L ++ + + V+D G+ I
Sbjct: 360 LRALSSFQSKIRNAEDEDVMDSQYGSKI 387
>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 475 LFQGKTVLDIGCGTGILSMFAAKAGATKVLAIECS-NIVDYARKIIEANRLDDVIEIIKG 651
L Q TVL++G GTG L++ + A KV+A+E + K ++ + ++++ G
Sbjct: 48 LKQSDTVLEVGPGTGNLTVRMLEK-ARKVIAVEMDPRMAAEITKRVQGTPKEKKLQVVLG 106
Query: 652 KV 657
V
Sbjct: 107 DV 108
>SPBC1347.09 |||hexaprenyldihydroxybenzoate
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 284
Score = 27.1 bits (57), Expect = 2.4
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +1
Query: 325 NGPDKNVTAEEMTSRDYYFDSYAHFGIHEEMLK-DEVRTLTYKNAMYHNKHLF---QGKT 492
+ P ++ ++S+ F+ + + ++ K D+ R L + N + F G +
Sbjct: 21 DNPSTLAISKVISSKILQFEDNSETSLRHDLPKYDQDRLLLTSDDDLTNVNNFWKKSGMS 80
Query: 493 VLDIGCGTGILS 528
+LD CGTG++S
Sbjct: 81 ILDFACGTGLIS 92
>SPAPB17E12.10c |||SAM-dependent
methyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 484 GKTVLDIGCGTGILSMFAAK 543
G+ V+D+GC GI S AA+
Sbjct: 76 GQIVVDLGCAPGIWSTIAAR 95
>SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +1
Query: 460 YHNKHLFQGKTVLDIGCGTGILSM-FAAKAGATKVLAIECS-NIVDYARKII 609
Y K++ + +LD+GCG G +++ F +V+ +E S ++D A + +
Sbjct: 33 YMLKYVKKTDRILDVGCGPGTITVGFPKYVPEGEVIGVEPSQELLDKAEEAL 84
>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 657
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +1
Query: 331 PDKNVTAEEMTSRDYYFDSYAHFGIHEEM 417
PD E D++FD Y+ G+H M
Sbjct: 387 PDTASETEHSEIEDFHFDPYSEKGVHIAM 415
>SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 273
Score = 25.4 bits (53), Expect = 7.3
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +1
Query: 493 VLDIGCGTGILSM-FAAKAGATKVLAIEC-SNIVDYARKIIEANR 621
++DIGCG G L++ + T VL +E + DY ++ I+A R
Sbjct: 84 IVDIGCGYGGLTVALGPQFPDTLVLGMEIRMQVSDYLKEKIQALR 128
>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 396
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/25 (40%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = -2
Query: 648 FNNLN-DIIESVCLNNFTSIVNNVG 577
F +LN +I ++CLNN+ S + ++G
Sbjct: 274 FEHLNKSLITTLCLNNYLSFLMDIG 298
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 648 FNNLNDIIESVCLNNFTSIVNNVGALYR*DLGST 547
FN L IES+ + VN +G+L + L ST
Sbjct: 675 FNQLMSFIESLAVQKLPDYVNQIGSLSQYLLYST 708
>SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 268
Score = 25.0 bits (52), Expect = 9.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 493 VLDIGCGTGILSMFAAKAG 549
+LDIGCG+GI + G
Sbjct: 51 ILDIGCGSGISTQIGESQG 69
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 214 IQVILLKITNFDN*IIKMETMDVAQEGTS 300
+++ILL++ NF+ I K E + G S
Sbjct: 335 LELILLELENFEKEIFKAEVSETKNNGNS 363
>SPBC4B4.04 |||translation initiation factor eIF2A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 576
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 225 YNLNIFCDKSICHRLSTNKV 166
+NL CD+S+ RL TN+V
Sbjct: 128 WNLQYTCDESLAARLVTNEV 147
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,579,407
Number of Sequences: 5004
Number of extensions: 51480
Number of successful extensions: 134
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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