Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_J10
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.84 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   0.84 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   2.6  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   3.4  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    22   4.5  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 18  NYS*SLIRLKNIFYNKLKQKPRPPNYKVSCVFSFVFFIH-IILCSLRV 158
           NY  +L+    ++Y+ L     P  YK SC     FF + +  C L++
Sbjct: 124 NYEVTLMTKATVYYSGLVVWQPPAVYKSSCSIDVEFFPYDVQTCVLKL 171


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +3

Query: 420 CHVANSDHRKKL-FEVAKSK 476
           C V NS H+KKL F +AK +
Sbjct: 349 CSVTNSPHQKKLRFHLAKER 368


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +3

Query: 111 FSFVFFIHIILCSLRVMFRLKFIRSLMNTKMSKTPNFVRANHNDRLK 251
           F+F F       S    F++     +  T  +  PN+V  NH DR++
Sbjct: 319 FNFKFITDANSSSTPEQFKVIIDNWIKGTPQNNVPNWVMGNH-DRVR 364


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +3

Query: 486 LDILVSNAAVNPTV---SPILETDEQVWDKIFEINVKS 590
           +D++V++    P V   SP  E   Q+W +I + ++ S
Sbjct: 263 VDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNS 300


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 60  NKLKQKPRPPNYKVSCV 110
           N    KP  P YK+ CV
Sbjct: 26  NLAMMKPTLPGYKIECV 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,352
Number of Sequences: 438
Number of extensions: 3998
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)