Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_J06
         (372 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    27   5.7  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    27   5.7  
U28735-6|AAF99954.1| 1493|Caenorhabditis elegans Hypothetical pr...    26   7.5  
AF024493-4|AAB70321.2|  249|Caenorhabditis elegans Hypothetical ...    26   7.5  

>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
            F57F4.4 protein.
          Length = 2090

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
 Frame = +2

Query: 89   HIGLFATCTEV*LG-----SGEAISITKVLGGNNIVTFPTVHNMV 208
            ++GL +T   + LG     SG+  S+T ++GG N+ T+  V + +
Sbjct: 1686 YVGLQSTYNSLSLGAETYCSGQCASLTGIVGGFNVTTYHCVADTI 1730


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
            interacting proteinprotein 1 protein.
          Length = 2153

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
 Frame = +2

Query: 89   HIGLFATCTEV*LG-----SGEAISITKVLGGNNIVTFPTVHNMV 208
            ++GL +T   + LG     SG+  S+T ++GG N+ T+  V + +
Sbjct: 1686 YVGLQSTYNSLSLGAETYCSGQCASLTGIVGGFNVTTYHCVADTI 1730


>U28735-6|AAF99954.1| 1493|Caenorhabditis elegans Hypothetical protein
            F48E3.3 protein.
          Length = 1493

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
 Frame = +1

Query: 79   APFPHRPFCHLHRGLIG--FWR-GYF-NHKSTRR 168
            AP+ + PFC   + + G  FW+ GY+ NH + RR
Sbjct: 1324 APYGYVPFCESRKEMDGFRFWKQGYWANHLAGRR 1357


>AF024493-4|AAB70321.2|  249|Caenorhabditis elegans Hypothetical
           protein F23F1.2 protein.
          Length = 249

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -1

Query: 153 VIEIASPEPN*TSVQVAKRPMWKGGHPAKPGLF 55
           V+  ASP  N + V VA      G HP  PGLF
Sbjct: 208 VLAQASPTLNKSPVGVAPPQTSPGLHPVAPGLF 240


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,163,734
Number of Sequences: 27780
Number of extensions: 122226
Number of successful extensions: 288
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)