Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_J03
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    27   1.8  
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual        27   2.4  
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    26   4.2  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    26   5.5  
SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase catal...    26   5.5  
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    25   9.6  
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    25   9.6  
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    25   9.6  

>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -3

Query: 642 YFIITLEFLLKSEATFLGVILDSRLTGSPHCYYISD-KCEKILNILR 505
           Y + + + L+KSE        D  LT SP+ Y+ S  + EK L + R
Sbjct: 40  YLLNSFKLLVKSEGNNQSTTADVTLTKSPNAYHASSAREEKDLQVSR 86


>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 510

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -3

Query: 450 NALIRSILDYGTFILEPCNAVALHKLDIIQSKALRI 343
           NAL++ I  Y     E  +A+A   L+ I+SKALR+
Sbjct: 200 NALMKVIAGYDEENTEDYSALAAADLESIRSKALRV 235


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 246 FLFRAFQVYNHPLYTKLRSLLECMDYPYWAHKS 148
           F+F A Q YN   Y ++ S L   + P+W+  S
Sbjct: 393 FIFVAQQTYNALGYAQVVSDLNSTELPFWSDSS 425


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = -3

Query: 156  HKSPPCLIVSLQKYLALQAPTHRSQFLPIFCVNYD 52
            H S   L    Q  L +    H  + LP  C NYD
Sbjct: 1065 HNSAYSLDAISQNLLPMLKDLHSKELLPAICFNYD 1099


>SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase
           catalytic subunit Dpm1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 244 KPVTKKLSSEVQGGFRTFDLQSVNRARTHS 333
           KPV + L SEV      F ++ + RAR H+
Sbjct: 169 KPVLETLMSEVTSKGYVFQMEIIARAREHN 198


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 360 TG*CLTYGELLHYRVQV*MFHSPKYSLL 443
           TG C+T   L ++R+Q   ++  KY++L
Sbjct: 226 TGICITVDSLFYHRIQFVAWNIVKYNVL 253


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 150 SPPCLIVSLQKYLALQAPTHRSQFLPIFCVNYD 52
           S  CLI+  +K LALQA  H  + LP   +  D
Sbjct: 77  SEQCLILVHRKELALQALKHCRESLPNKSIEID 109


>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 318 PINALQVECSEAPLHLRRQFLCDRF 244
           PI+AL+   SEA     R  LC+R+
Sbjct: 115 PIDALESHLSEASFPSLRSVLCERY 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,789,099
Number of Sequences: 5004
Number of extensions: 59583
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)