Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_J03
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0097 + 20062385-20062745,20063374-20063613,20063831-200641...    30   1.4  
05_01_0061 - 422914-423027,423114-423149,423250-423324,423412-42...    30   1.9  
10_08_0410 - 17716370-17716743,17716839-17716939,17717104-177173...    29   3.3  
05_06_0243 - 26639497-26641173                                         28   7.5  
03_05_0650 - 26423829-26424179,26424379-26424612,26424961-264252...    27   9.9  
01_01_1161 + 9244628-9245748,9247696-9247828,9248233-9248448,924...    27   9.9  

>11_06_0097 +
           20062385-20062745,20063374-20063613,20063831-20064102,
           20064304-20064315
          Length = 294

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = -1

Query: 308 LCRSNVLKPPCTSDDNFFVTGFYLEHSKFIIILFTLSYGLCWNVWIIRTGLINRR 144
           LC  ++LK  C  +D     G Y +H + + + F L  G    +W++ + L+ ++
Sbjct: 226 LC-GDILKKKCPGNDASNDYGSYKDHYELLYLCFGLVIGFVLGLWVVFSTLLFKK 279


>05_01_0061 -
           422914-423027,423114-423149,423250-423324,423412-423465,
           423554-423620,423912-424025,424114-424215,424220-424269,
           424380-424424,424559-424642,424996-425100,425300-425443,
           425535-425643,425738-425766
          Length = 375

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
 Frame = +2

Query: 251 SQRNCRLRCRGASEHSTCKALI-----GLERIAPAIILRALDWIMSNLW 382
           S RN R      S ++T K  +     G ER+APAI++   D+ +  LW
Sbjct: 76  SARNARENSSEPSSNTTLKIYVPTNPKGAERLAPAIVVPETDFHLRRLW 124


>10_08_0410 -
           17716370-17716743,17716839-17716939,17717104-17717300,
           17717392-17717677,17717768-17718004,17718226-17718281,
           17720042-17721226
          Length = 811

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = -3

Query: 483 GAHPFSLKLLYNALIRSILDYGTFILEPCNAVALHKLDIIQSKALRII----AGAMRSSP 316
           G HP+SL  + N ++RS       I +P  + +  +L+++Q K   ++      A RSSP
Sbjct: 552 GGHPYSLATIRNGILRSNRRQPYTIAKPFGS-SDKRLELVQGKVNPLVHFGLCDATRSSP 610

Query: 315 I 313
           I
Sbjct: 611 I 611


>05_06_0243 - 26639497-26641173
          Length = 558

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = -3

Query: 411 ILEPCNAVALHKLDIIQSKALR 346
           I+E C+A+ALH L +++S A+R
Sbjct: 320 IVEFCSAIALHSLGMLESIAIR 341


>03_05_0650 -
           26423829-26424179,26424379-26424612,26424961-26425236,
           26425372-26425648,26425751-26425764,26425843-26425989,
           26426306-26426366,26426570-26426604,26426688-26426882,
           26428230-26428439,26428865-26428940,26429519-26429799
          Length = 718

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 144 PCLIVSLQKYLALQAPTHRSQFLPIFCVNYD 52
           P ++  L  Y  L    +R+QFL ++C  YD
Sbjct: 504 PLILPFLLVYFFLGYVVYRNQFLNVYCTKYD 534


>01_01_1161 +
           9244628-9245748,9247696-9247828,9248233-9248448,
           9249802-9249957,9250788-9250979,9251118-9251234,
           9251822-9252193
          Length = 768

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -3

Query: 453 YNALIRSILDYGTFILEPCNAVALHKLDIIQSKALRIIAGAMRSSPIN 310
           +N L+R +   G   +  CN   +   D I+S  + ++ G M   P+N
Sbjct: 518 WNDLVRDLRRRGVRTMTYCNPCLVPANDGIKSSVVGLLTGGMSGFPLN 565


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,535,399
Number of Sequences: 37544
Number of extensions: 358986
Number of successful extensions: 710
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)