Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_J03
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    41   7e-04
AL031627-18|CAA20951.1|  347|Caenorhabditis elegans Hypothetical...    28   5.1  
Z71185-12|CAA94906.3|  460|Caenorhabditis elegans Hypothetical p...    28   6.7  
U41995-11|AAA83467.1|  665|Caenorhabditis elegans Hypothetical p...    27   8.9  
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
            protein R11E3.3 protein.
          Length = 931

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 4/132 (3%)
 Frame = -3

Query: 594  LGVILDSRLTGSPHCYYISDKCEKILNILRCLSGVWWGAHPFSLKLLYNALIRSILDYG- 418
            LG+ L++      H        +    +++ ++G  WG    ++     ALI+    YG 
Sbjct: 639  LGITLNTMTGTKDHVGNAIKSMQNKTRVIKSMAGTSWGNDRETMLYTTQALIKPTALYGA 698

Query: 417  ---TFILEPCNAVALHKLDIIQSKALRIIAGAMRSSPINALQVECSEAPLHLRRQFLCDR 247
               T +L   N   L KL+I    ALR   G  + +P + +  EC   PL    +    +
Sbjct: 699  PAWTSLLSDTN---LEKLEIAYRSALRACVGLTKDTPTDHIYQECRVLPLKEEYKLATQQ 755

Query: 246  FLFRAFQVYNHP 211
                A +   HP
Sbjct: 756  MYLAAIKSNTHP 767


>AL031627-18|CAA20951.1|  347|Caenorhabditis elegans Hypothetical
           protein Y102A5C.29 protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +2

Query: 560 LPVSLESKITPRNVASLFNRNSNVIIKYRH 649
           LP S+   I   N AS  N NSN   KY H
Sbjct: 106 LPASITCFIYRHNAASQINENSNSSTKYSH 135


>Z71185-12|CAA94906.3|  460|Caenorhabditis elegans Hypothetical
           protein C35A5.3 protein.
          Length = 460

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 174 DYPYWAH-KSPPCLIVSLQKYLALQAPTHRSQFLPIF 67
           D PYW   KSP  LIV L  +  + A    + ++PI+
Sbjct: 237 DIPYWKIIKSPVILIVWLNAFFEMTAVIFFATYMPIY 273


>U41995-11|AAA83467.1|  665|Caenorhabditis elegans Hypothetical
           protein E02C12.10 protein.
          Length = 665

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
 Frame = -3

Query: 351 LRIIAGAMRSSPINALQVECSEAPLHLRRQFLC---DRFLFRAFQVYNHPLYTKLRSLLE 181
           L I++  + +SPI+  +VE S+A +  ++  +    D      + + NHP + KL +L E
Sbjct: 365 LPIVSSFLDNSPIS--EVEKSQARIKNQKNMIAMMEDLIEVHDYNMKNHPDFLKLMALYE 422

Query: 180 CMDYPYWAHKSPPCLIVSLQKYLALQA 100
             D     H +   +  +LQK    +A
Sbjct: 423 FSDGILKTHVTRENVEETLQKTFNTEA 449


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
 Frame = -3

Query: 645 LYFIITLEFLLKSEATFLGVILDSRLTGSPHCYYISDKCEKILNILRC--LSGVWWGAHP 472
           +Y I  L     + A  LG++ DS+LT  PH   I       L +LRC  L   +    P
Sbjct: 181 VYKINNLPISPSNIARDLGILTDSKLTFKPHIKKIVS-----LALLRCKQLLKSFKSLCP 235

Query: 471 FSLKLLYNALIRSILDYGTFILEPCNAVALHKL 373
                L+   I  +++YG+ +  P  + +L  L
Sbjct: 236 EFYCNLFKTYILPLIEYGSAVYSPKPSSSLSTL 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,208,693
Number of Sequences: 27780
Number of extensions: 319982
Number of successful extensions: 628
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)