Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_I24
         (530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    27   2.3  
SPAC31G5.18c |||ubiquitin family, human C1ORF55 related|Schizosa...    26   3.0  
SPAC18B11.09c |||N-acetyltransferase |Schizosaccharomyces pombe|...    26   3.0  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   5.3  
SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr 1||...    25   7.0  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   9.3  

>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 303 AKIMPEKAI*RPEYLTFAFLAITCAEWIS 389
           AKI+P K +  P+Y TF    +  AE+++
Sbjct: 200 AKILPPKYVNSPDYTTFPSSFVGTAEYVA 228


>SPAC31G5.18c |||ubiquitin family, human C1ORF55
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 191 ELNKITAHISSELLFDETDFLHRPEI*LYTIVDRSRNIYFYRK 63
           +LNK+ A  SS   FD+ ++L   E  +  + D  +N   YR+
Sbjct: 150 KLNKVLAADSSSSRFDDHEYLEDLEQSVSNVRDAFQNSLLYRR 192


>SPAC18B11.09c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 207

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -1

Query: 194 SELNKITAHISSEL-LFDETDFLHRPEI*LYTIVDRSRNIYFYRKIYMSYLCXLVVCRSR 18
           +EL K  A + +E+ +FDE+     PEI      D   N++F +K + +Y C  +     
Sbjct: 59  AELIKRRAELLAEVFVFDESS---APEIEPPMAFDYGFNVHFGKKFFANYNCTFLDVAII 115

Query: 17  WVSNN 3
            + NN
Sbjct: 116 TIGNN 120


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
 Frame = +2

Query: 281  PQCVF-----KSCKNNARKSNLTAGVSYFRFPSNH 370
            P+CV      +SC +  R   LTA  +  R+PS+H
Sbjct: 1961 PECVIISTMNRSCDSKCRYFLLTAIANQLRYPSSH 1995


>SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 237

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 225 QWTAIG*NDDSQCQPVSQYRNVYS 296
           QW  IG    S+C+ ++  +N+YS
Sbjct: 69  QWHFIGSLQSSKCKKIASVKNLYS 92


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +2

Query: 260 MSTRLTIP-QCVF-KSCKNNARKSNLTAGVSYFRFPSNHVCRMDL 388
           M + L +P +C+  KS +NN RK  +     YF   SN +   +L
Sbjct: 410 MYSTLHVPKECLLSKSYRNNVRKEVILLMTEYFAIFSNSIAFPEL 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,164,121
Number of Sequences: 5004
Number of extensions: 42593
Number of successful extensions: 84
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)