Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_I24
         (530 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0222 + 13229330-13229501,13230175-13230275,13230381-132305...    28   4.1  
02_02_0265 - 8405936-8406367,8406488-8406940,8407073-8407335,840...    28   5.4  
11_04_0334 - 16489768-16489796,16490588-16490936                       27   7.1  
03_02_0014 + 4955759-4956106,4956229-4956277,4956372-4956579,495...    27   7.1  
04_04_0326 - 24407201-24407374,24407397-24407460,24408266-244086...    27   9.4  

>06_02_0222 +
           13229330-13229501,13230175-13230275,13230381-13230574,
           13232600-13233068
          Length = 311

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -1

Query: 458 CPVSISGDLSWLIKVISCFSGDNRDPFCTRDC*ESE 351
           CP S SG  S      S  SGD  DP C + C  S+
Sbjct: 225 CPGSGSGSSSSFSSSSSSTSGDAEDPACAQRCATSD 260


>02_02_0265 -
           8405936-8406367,8406488-8406940,8407073-8407335,
           8407445-8407751
          Length = 484

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 11  RPNATCRLPXYIDMTYIFYGKSRYCGFDQQ*YITRFRVGAENPSR 145
           +P  T R   +     + Y + +Y G D+     + RV  ENPSR
Sbjct: 261 KPTLTQRQEEHRQYQQVQYREGQYNGLDENFCTIKARVNIENPSR 305


>11_04_0334 - 16489768-16489796,16490588-16490936
          Length = 125

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 285 CGIVRRVDIGCHHFSLSPSTAEH 217
           CG VRRVD+GC    ++P   ++
Sbjct: 70  CGAVRRVDVGCLCGMVTPEVEQY 92


>03_02_0014 +
           4955759-4956106,4956229-4956277,4956372-4956579,
           4956700-4956874,4956981-4957046,4957150-4957263,
           4957366-4957482,4957589-4957715,4957826-4958112,
           4958209-4958399,4958937-4959022,4959117-4959193,
           4959330-4959473
          Length = 662

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -2

Query: 400 LATIEIHSAHVIARKAKVRYSGR*IAFSGIIFATFEYTL 284
           L  ++ H+A++I +  K+ +     AF G+IF++ EY L
Sbjct: 456 LGLVDYHTAYLIWKVDKLDFLACLGAFFGVIFSSVEYGL 494


>04_04_0326 -
           24407201-24407374,24407397-24407460,24408266-24408689,
           24408885-24409057,24409178-24409275,24409723-24409853,
           24410053-24410174,24411091-24411245,24411976-24412081,
           24412328-24412419,24412499-24412620,24413444-24413544,
           24413636-24413849,24414173-24414311,24415228-24415584
          Length = 823

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -1

Query: 476 EHGRQRCPVSISGDLSWLIKVISCFSGDN 390
           +H  +R  +++   LSW++ V+ CF+G +
Sbjct: 171 DHVSKRALIALFLILSWVVVVVQCFTGSD 199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,638,960
Number of Sequences: 37544
Number of extensions: 262168
Number of successful extensions: 456
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)