Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_I17
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   4.5  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   6.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.0  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -1

Query: 627 FGFCIIGQESFDGMRNIEATVNSTLHSSK 541
           F +C+ G ESF   R  EA  N      K
Sbjct: 429 FLYCLAGDESFRKRRQREAAGNCRKRGEK 457


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 609 GQESFDGMRNIEATVNSTLHSSKD 538
           G     GM NIE  + +T +SSK+
Sbjct: 187 GSSVVTGMNNIETYIVNTNYSSKN 210


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 609 GQESFDGMRNIEATVNSTLHSSK 541
           G     GM NIE  + +T +SSK
Sbjct: 187 GSSVVTGMNNIETYIVNTNYSSK 209


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -3

Query: 382  VLIADQLNMLQHNLSDQPSHHNVATHVNKQRTQ 284
            V+   +   L   +S    HHNV  H    RTQ
Sbjct: 1661 VISDSESGRLDTEMSTWGYHHNVNKHCTIHRTQ 1693


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,702
Number of Sequences: 438
Number of extensions: 3871
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)