Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_I15
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos... 79 6e-16
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ... 28 1.4
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma... 28 1.4
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 1.8
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 27 2.4
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|... 27 3.1
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c... 26 5.5
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac... 25 7.2
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 25 9.5
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ... 25 9.5
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 9.5
>SPAC1635.01 |||voltage-dependent anion-selective
channel|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 79.0 bits (186), Expect = 6e-16
Identities = 46/184 (25%), Positives = 87/184 (47%), Gaps = 1/184 (0%)
Frame = +2
Query: 107 PHTMLTLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQES-GKVFGSLSSKF 283
P + K ND+ + + G L ++T + +GV F ++ NQ++ G + G L + F
Sbjct: 3 PPAYAAINKLCNDLLQRDFPVGATLLSVRTTAPNGVVFN--VSGNQDAKGVISGKLETSF 60
Query: 284 AVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDT 463
K GLT ++ W T N L + + + ++ A GL + + TF+P T KT L +
Sbjct: 61 NDKANGLTISQGWTTANVLESKVGLSEQFAPGLHLNVNTTFSPATAAKTAILNLEHQHPL 120
Query: 464 VAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHT 643
+ + +++ + D + ++G+LAG +D QK S +GY + ++
Sbjct: 121 IHTHASVNALERKFLGDF--TVGHEGFLAGAEFGYDVQKGNVSNYAATIGYLASPLSVAL 178
Query: 644 NVNN 655
+N
Sbjct: 179 QASN 182
>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = +3
Query: 195 PRASLVLNSP-AGS--PPTRKAERFLAAFPPNLQ 287
P L + P AGS P T+KA +FPPNLQ
Sbjct: 378 PNTKLSITIPEAGSTDPETQKARAAFESFPPNLQ 411
>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 628
Score = 27.9 bits (59), Expect = 1.4
Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 2/112 (1%)
Frame = +2
Query: 188 LKTKSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDITIQDK 367
L ++ + SG + + V + + + G ++DN I +
Sbjct: 173 LSIEAGRNAQVESGFSLGESFAHVGNDMQFHLPISNSGAATPRSVHSDNQSQISIEVGRD 232
Query: 368 IAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAV--NTNLDLDLAGPVVDV 517
A L G PQ T F+ ++ T+LD +L PV D+
Sbjct: 233 APAAAATDLSGIIGPQMTKSPASSVTHFSTPSMLPIGGTSLDDELLAPVDDL 284
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +2
Query: 386 VTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDL 490
V++E P+ T +G+++T+F DT+ + L++
Sbjct: 3557 VSIEPLLKPEFFTGSGEVQTTFAKDTITITLPLNI 3591
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 27.1 bits (57), Expect = 2.4
Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 4/130 (3%)
Frame = +2
Query: 107 PHTMLTLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQES-GKVFGSLSSKF 283
PHT L G+ GY V++ L+ +G+ + + T E GK+ S +
Sbjct: 116 PHTKLYNGQNVVASIENGYQSNVYEFQLRLMKNNGIAWENTKTEFMEDVGKLLHSKDN-- 173
Query: 284 AVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTG--TKTGKLKTSFTN 457
+ ++ + + N L T +++ + L+ P TG TK L +N
Sbjct: 174 SGLGTSISMSLRPNLARPLLTASSVKSQSVRSLREVGSNLPIP-TGSLTKIDGLNNQLSN 232
Query: 458 D-TVAVNTNL 484
D T + TN+
Sbjct: 233 DLTRSQTTNI 242
>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 287
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 197 KSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLAT 346
+S SG S + S + V +L S +K + LTF +W + +AT
Sbjct: 176 RSRSGHTLMSQLKSKGRN--VMATLFSPLFIKAFALTFVSEWGDRSQIAT 223
>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 433
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = -1
Query: 244 LVGGDPAGEFNTRLALGLQVEFENTKVIALAEDIIG--LLSQGQHSMGEPC 98
L GG G+F++ L G++ ++ T+ AE +IG L+++ G+ C
Sbjct: 72 LAGGRGKGQFDSGLRGGVRPVYDATEARMFAEQMIGHKLITRQTGPAGKIC 122
>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 483
Score = 25.4 bits (53), Expect = 7.2
Identities = 27/139 (19%), Positives = 58/139 (41%)
Frame = +2
Query: 86 YKTQTWLPHTMLTLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFG 265
Y T+ + HT++ + + + G + G F+ + K E G T + F
Sbjct: 45 YATKNYPAHTVINM-PALSPTMTTG-NIGAFQKKIGDKIEPGDVLCEIETDKAQID--FE 100
Query: 266 SLSSKFAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKT 445
+ K T T+ LA + + +AA T+E + A + K+G+ K+
Sbjct: 101 QQDEGYLAKILIETGTKDVPVGKPLAVTVENEGDVAAMADFTIEDSSAKEPSAKSGEEKS 160
Query: 446 SFTNDTVAVNTNLDLDLAG 502
+ +++ + T+ +++G
Sbjct: 161 APSSEKQSKETSSPSNVSG 179
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 335 TLATDITIQDKIAAGLKVTLEGTFAPQTGTKTG 433
T+A D++ ++ A VTLEGT +TG TG
Sbjct: 630 TVARDLSYNKRLNAKT-VTLEGTVIHKTGLITG 661
>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 664
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 221 TSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLAT 346
T+G + +G V G LS + + F EK++ + LAT
Sbjct: 487 TTGANNPMLAGNVVGLLSPALYILILSIIFPEKYDFNRLLAT 528
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -2
Query: 585 FAFCVSNWVCTPASQPW*FSTAATSTTG 502
F F S+W P +PW FST A G
Sbjct: 1677 FNFAKSHW--EPVIEPWTFSTTAIMKDG 1702
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,723,991
Number of Sequences: 5004
Number of extensions: 54856
Number of successful extensions: 143
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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