Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_I11
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    28   1.4  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    27   1.8  
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.1  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    26   4.1  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    26   4.1  
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    26   4.1  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    26   5.5  
SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr 1|||...    25   7.2  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    25   7.2  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    25   9.5  
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.5  
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p...    25   9.5  

>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = +3

Query: 141 FRYLLFKKYCKIIVKNPWLTNMDNLK---NGDNVLI-IWKNDSQGNITSLIEDVKKVIQS 308
           FRY L  ++ ++ ++N W+ +  N     N  N  I  WK +S    T ++  V+K+I  
Sbjct: 592 FRYFLLLRHVEMQLENSWVQHSKNSAWRLNSSNAKIEQWKRNSWLLRTRMLSFVQKIIYY 651

Query: 309 DT 314
            T
Sbjct: 652 TT 653


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 23/104 (22%), Positives = 45/104 (43%)
 Frame = +3

Query: 333 DMITEGSREHSSFDVVLSNWLPPHSVSHSDXXXXXXXXXXXPNGKLILKDLNKLTSTLKL 512
           D++   S   +S   + S WLPP S+S++             NG   L +++  +++L L
Sbjct: 353 DLLRAQSTTVASVKHLGSAWLPPRSLSYNPAEKVALLTSSADNGVYELVNVSSRSNSLPL 412

Query: 513 NGFVNVTELENNRYVAEKPKFEVGSKSSLKLNGKATVWKLDSTV 644
               N+    ++     + +F V S+S   +  K    K+  T+
Sbjct: 413 KD--NIKGPGDDAIFVARNRFAVFSRSDQTIEIKDLSNKVTKTI 454


>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 213 LKNGDNVLIIWKNDSQGNITSLIEDVKKVIQSDTVVLENSDMI 341
           LKN   VL   K   +GN   L+E+  +V  S  ++L++ D+I
Sbjct: 115 LKNSSEVLTASKLTDEGNSKPLLEE-GEVAVSSPILLDSKDVI 156


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = +3

Query: 144 RYLLFKKYCKIIVKNPWLTNMDNL----KNGDNVLIIWKNDSQGNITSLIEDVKKVI 302
           RY+  ++ C +I +   +TN++ L     +G+ +L I         T L  D+K  I
Sbjct: 305 RYISLQEVCSVIAQQLQITNLEALNKLSSHGETLLQIMHTAFTWRGTKLFNDIKHAI 361


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = +3

Query: 180 VKNPWLTNMDNLKNGDNVL---IIWKNDSQGNITSLIEDVKKVIQSDTVVLENSDMITEG 350
           ++ PW+ N D+  + +N+L       NDS+  +T   +++ +      +   +SD   +G
Sbjct: 160 IRPPWIGNNDHATDKENLLESDASSSNDSESELTDSADNMNESDSESEIESSDSDH-DDG 218

Query: 351 SREHSSFD 374
               S  D
Sbjct: 219 ENSDSKLD 226


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 22/73 (30%), Positives = 34/73 (46%)
 Frame = +3

Query: 177 IVKNPWLTNMDNLKNGDNVLIIWKNDSQGNITSLIEDVKKVIQSDTVVLENSDMITEGSR 356
           I+KN  +   D L +G     IWK D +  I+  ++  +      TV + NS   T GS+
Sbjct: 499 IIKNFMIQGGDPLGDGTGGESIWKKDFEDEISPNLKHDRPF----TVSMANSGPNTNGSQ 554

Query: 357 EHSSFDVVLSNWL 395
              + D  L+ WL
Sbjct: 555 FFITTD--LTPWL 565


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 23/77 (29%), Positives = 36/77 (46%)
 Frame = +3

Query: 9   CLTIELKFIIVHYL*SFT*ASSHWLGNLPIACYLFQGNKLTAL*FRYLLFKKYCKIIVKN 188
           C   E+ F+ + YL SFT  +   LG LP+  +++   +L  L +  LL    C  I   
Sbjct: 164 CAANEMFFVAL-YLLSFTPRTPPKLGYLPVPSFIYSTGEL-PLSYPTLL-AVLCGPICLA 220

Query: 189 PWLTNMDNLKNGDNVLI 239
             + N+  L N  N L+
Sbjct: 221 KQIINVVQLVNAANALV 237


>SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 210 NLKNGDNVLIIWKNDSQGN 266
           +LK GD + I+ K D+QGN
Sbjct: 243 SLKKGDIIAILSKTDTQGN 261


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +3

Query: 276 LIEDVKKVIQSDTVVLENSDMI 341
           ++ D++  ++S+ VVLE SD++
Sbjct: 280 ILSDIRSKLESERVVLEQSDLL 301


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 188 SLAYKHGQLEKRRQCSYYLEERQSRKHYEPNRRRK 292
           S++ K  + E++RQ     E RQSR   E  +++K
Sbjct: 355 SISIKAQEEERKRQAEIEKEIRQSRLQEEERKKKK 389


>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 197 YKHGQLEKRRQCSYYLEERQSRKHYE 274
           Y H + ++ R   YYLE+ Q R+ +E
Sbjct: 70  YLHEREQEARLQEYYLEQLQERRAFE 95


>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 506

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = +3

Query: 168 CKIIVKNPWLTNMDNLKNGDNVLIIWKNDSQGNITS 275
           CK+IVK  WL          N  +IW    +  + S
Sbjct: 72  CKLIVKIDWLNEPKESLTPGNPYVIWHRKPEMKVGS 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,736,044
Number of Sequences: 5004
Number of extensions: 54558
Number of successful extensions: 149
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)