Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_I11
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0020 - 16504322-16504654,16504758-16504785,16504937-165049...    30   1.4  
05_01_0278 + 2156126-2156128,2157677-2158069                           29   4.3  
09_04_0697 + 19566182-19566851,19567565-19567598,19567677-195677...    27   9.9  

>03_04_0020 -
           16504322-16504654,16504758-16504785,16504937-16504989,
           16505377-16505463,16505636-16505704,16506071-16506145,
           16507040-16507210,16507693-16507793,16508062-16508139,
           16508492-16508648,16508737-16509006,16509369-16509485,
           16510250-16510339,16510417-16510629,16510742-16510891,
           16511929-16512342
          Length = 801

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +3

Query: 180 VKNPWLTNMDNLKNGDNVLIIWKNDSQGNITSLIEDVKKVIQSDTVVLENSDMITEGSRE 359
           VKN   T +  L  GD   II  ND   + +S +E V +    +     N++ I EG  +
Sbjct: 352 VKNAMYTTLSELVQGDYFNIITFNDELHSFSSCLEQVNEKTIENAREWVNTNFIAEGGTD 411


>05_01_0278 + 2156126-2156128,2157677-2158069
          Length = 131

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +1

Query: 301 FKVILWFWKTPT*SLKVPVSIHHLM 375
           FK  LWFW TP    K P S H +M
Sbjct: 34  FKTALWFWMTPRPPSK-PYSCHDVM 57


>09_04_0697 +
           19566182-19566851,19567565-19567598,19567677-19567725,
           19567891-19567949,19568063-19568079,19568178-19568329,
           19568459-19568548,19568793-19568886,19568976-19569127,
           19569630-19569727,19570049-19570184,19570695-19570793,
           19570898-19571029
          Length = 593

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +3

Query: 87  NLPIACYLF-QGNKLTAL*FRYLLFKK-YCKIIVKNPWLTNMDNLKNGDNVLI 239
           +L IA Y F +G+ LT +   + +    Y  ++  NP +TN D +  GD VL+
Sbjct: 31  SLAIAAYYFSEGSNLTFIATIFAIGGGGYQALLPYNPAITNPDYVVTGDRVLV 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,134,007
Number of Sequences: 37544
Number of extensions: 292503
Number of successful extensions: 647
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)