Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_I08
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|... 31 0.14
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 30 0.25
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe... 27 2.3
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 4.1
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 26 4.1
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 5.4
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces... 25 7.1
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 25 9.4
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 25 9.4
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 25 9.4
SPBC25B2.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.4
>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 31.1 bits (67), Expect = 0.14
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +3
Query: 285 ELEFRRISGGLSNFLYYVALPE 350
+L +RISG L+N +YYVA PE
Sbjct: 62 KLHIKRISGALTNAVYYVAPPE 83
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 30.3 bits (65), Expect = 0.25
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +3
Query: 378 KRESSPETELETVASKLVKKSMARSNSFSIEEPKK 482
K + SP+ ++ + K +KKS R+NS S EP+K
Sbjct: 5 KNQKSPKPKVASSKLKNIKKSSKRNNSQSSTEPRK 39
>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 551
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -3
Query: 244 LQIRAATSRISASVPHICSFAQLFRFNSKNILYVFR 137
L I + + IS+S+P SF+QL R NS Y++R
Sbjct: 148 LSITTSGASISSSLPKSTSFSQLLRANS----YIYR 179
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -2
Query: 269 LPRSMQVI-PADSGGDFSHFRFRAAHLQFRTTVPIQLQKYFIRLSYI 132
L R+ ++ PAD+ DF HF+ +A T+ PI+L +I YI
Sbjct: 1078 LQRATEIAGPADAPNDFLHFKDQAT----ETSHPIRLYTRYIDKVYI 1120
>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +3
Query: 183 AKLQMCGTEAEMREVAARICRNYLHGAWKSVDPTELEFRRISGGLSNFL 329
A++ C +A+ +++ A R Y+H PT +EF +G +++F+
Sbjct: 232 ARILHCLEQAQFKDLPAETRRRYVHTVVVGGGPTGMEF---AGEMADFI 277
>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 481
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = +3
Query: 462 SIEEPKKVLLXIYGQVHGERAMDAIVTESVIFTLLSEXXLGPKLH 596
S E+ K+ I+ Q+ G+ ++ +V +I+T+ + + K H
Sbjct: 195 SFEQCGKIGSAIHEQLEGKEVVNELVAVYLIYTVFKDQGISSKAH 239
>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 7.1
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = +3
Query: 243 RNYLHGAWKSVDPTELEFRRISGGLSN 323
++Y H AW + T+ + +SGG+ +
Sbjct: 122 KSYYHNAWMQSENTKSKGNNVSGGIES 148
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +3
Query: 27 NVTNKISASSNFVLLYFSSYQKILNMFYSIKR--LLMNVRKTYKIFLE 164
+ TNK +S FV+L F+++ + N+F +I R L Y++ ++
Sbjct: 1640 SATNK--KASEFVILCFNAFLDVSNIFPAIVRVDLFATAMHVYEVIMD 1685
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 25.0 bits (52), Expect = 9.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 274 WTQLNWSLGGSAAVS 318
WT+LNWS+ G +S
Sbjct: 263 WTKLNWSVEGDTDIS 277
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 25.0 bits (52), Expect = 9.4
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +3
Query: 381 RESSPETELETVASKLVKKSMARSNSFSIEEPKKVLLXIYGQVHGERAMDAIVTESVIFT 560
RES +T + + ++ + KS + S + PKK I + G +D V E+ + +
Sbjct: 833 RESLEKTRVSSNDNRTLAKSFETTESNKMSTPKKSFEQIKSKSLGVTNVDGTVNEARLRS 892
Query: 561 L 563
L
Sbjct: 893 L 893
>SPBC25B2.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 125
Score = 25.0 bits (52), Expect = 9.4
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +3
Query: 348 EDPSKLCTFTKRESSPETELETVASKLVKK--SMARSNSFSI 467
EDPSKLC +++ ++P + + +KK S+ RS SF +
Sbjct: 35 EDPSKLCISSEKLNTP---MHNRSRSGIKKHTSVKRSRSFKL 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,440,372
Number of Sequences: 5004
Number of extensions: 44643
Number of successful extensions: 139
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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