Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_I08
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0589 + 4394154-4394513,4394641-4394762,4394862-4395057,439... 35 0.048
03_03_0019 + 13786412-13786578,13786692-13786744,13787299-137874... 32 0.45
08_01_0998 - 10136050-10138356 29 3.2
05_07_0144 - 28007477-28008412 28 5.6
02_04_0097 - 19673312-19673836 28 5.6
01_06_0838 + 32331588-32332346 28 5.6
09_04_0257 + 16170914-16171113,16171362-16171554,16171929-161720... 28 7.4
12_02_1262 + 27415191-27415279,27415367-27415565,27415635-274157... 27 9.7
09_06_0057 - 20567754-20568089,20568841-20569188,20569294-20569434 27 9.7
05_05_0379 + 24518724-24518950,24519076-24519343,24519482-245196... 27 9.7
04_04_1049 + 30414545-30414596,30414732-30414853,30415121-304151... 27 9.7
02_05_1148 - 34458732-34460627,34462299-34462547 27 9.7
>01_01_0589 +
4394154-4394513,4394641-4394762,4394862-4395057,
4395275-4395392,4395499-4395546,4395691-4395791,
4395893-4396000
Length = 350
Score = 35.1 bits (77), Expect = 0.048
Identities = 22/57 (38%), Positives = 29/57 (50%)
Frame = +3
Query: 477 KKVLLXIYGQVHGERAMDAIVTESVIFTLLSEXXLGPKLHGVFSGGKIXKFIPAKPL 647
+KVL+ IYGQ G E F +S GP+L G F G+I +FI A+ L
Sbjct: 68 RKVLVRIYGQ--GVEVFFDRADEVRTFECMSRHGQGPRLLGRFPNGRIEEFINARTL 122
>03_03_0019 +
13786412-13786578,13786692-13786744,13787299-13787417,
13787767-13788024,13799876-13800010,13800253-13800318,
13800673-13800785,13800895-13800967
Length = 327
Score = 31.9 bits (69), Expect = 0.45
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +3
Query: 33 TNKISASSNFVLLYFSSYQKILNMFYSIKRLLMNVRKTYKIFLELNRNSCAKLQMCGTEA 212
TN +S++ N VL Y L++ + K + + +F E N+ C++ Q+CG E
Sbjct: 185 TNVVSSTKNEVLWYLEDATGRLHVVEAHKATGFTLNRESSVFEE-NKQLCSRCQVCGQEG 243
Query: 213 EM 218
+
Sbjct: 244 SV 245
>08_01_0998 - 10136050-10138356
Length = 768
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 226 SPPESAGITCMERGRAWTQLNWSLGGSAAVSRTSCTTW 339
S P + T ++ G A + L W SAA S + TTW
Sbjct: 26 STPPCSSSTIIQHGEAESLLRWKSTLSAAASASPLTTW 63
>05_07_0144 - 28007477-28008412
Length = 311
Score = 28.3 bits (60), Expect = 5.6
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +3
Query: 177 SCAKLQMCGTEAEMREVAARICRNYLHGAWKSVDPTELEFRRISGGLS-NFLYYVALPED 353
+ A L++C + AA++ +LH KS +P E S GL+ + Y A P D
Sbjct: 178 AAASLRLCPLLSAAEREAAKLVEEFLHKKKKSPEPKPREKGEKSPGLAVRVVVYRASPLD 237
Query: 354 PSKLCTFTKRESSPET 401
+ T+R S+ T
Sbjct: 238 VMAM-ELTRRLSNCHT 252
>02_04_0097 - 19673312-19673836
Length = 174
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 464 HRGTKEGIAXDIRXGPRREGHGRDRDGICHIHFA 565
HRG + ++R R HGR DG +HFA
Sbjct: 116 HRGDGRLVLREVRIPSRELLHGRREDGRFKLHFA 149
>01_06_0838 + 32331588-32332346
Length = 252
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +3
Query: 381 RESSPETELETVASKLVKKSMAR--SNSFSIEEPKKVLLXIYGQVHGERAMDAIVTESVI 554
RE + +T A+ S+A S+S S EP+ V ++ +++D + ESV+
Sbjct: 3 REGGRDDGDDTGAASTSPNSVANQSSSSSSSSEPEPVPFPVHRLARYSKSIDKAIRESVL 62
Query: 555 FTLLS 569
LLS
Sbjct: 63 INLLS 67
>09_04_0257 +
16170914-16171113,16171362-16171554,16171929-16172034,
16172293-16172415,16172739-16172830,16173276-16173376,
16173458-16173524,16174016-16174108,16174247-16174375
Length = 367
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 237 ICRNYLHGAWKSVDPTELEFRRISGGLSN 323
IC+ + G W S+D + +SGG++N
Sbjct: 9 ICKELVRG-WSSLDSSRFSIETVSGGITN 36
>12_02_1262 +
27415191-27415279,27415367-27415565,27415635-27415775,
27415939-27416003,27416111-27416489,27416688-27417149,
27417226-27417546,27418184-27418501
Length = 657
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -2
Query: 248 IPADSGGDFSHFRFRAAHLQFRTTVPIQLQKYFIRLSYIH 129
+ D G HF AH F V ++L+ R+ Y+H
Sbjct: 414 VAGDDYGLLGHFCLTVAHRIFSNKVLVELESVVSRVPYLH 453
>09_06_0057 - 20567754-20568089,20568841-20569188,20569294-20569434
Length = 274
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 203 HGSGNARSRRPNLQELPAW 259
HG GN SR P L+E W
Sbjct: 170 HGDGNLFSRHPELEEATVW 188
>05_05_0379 +
24518724-24518950,24519076-24519343,24519482-24519616,
24519795-24519860,24520073-24520138,24520294-24520350,
24520767-24520919
Length = 323
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 302 DQRRSLELPVLRGASGRPVEALHVHETRKLTGN 400
DQ SL P LR GRPV+ H + K+ GN
Sbjct: 251 DQVASLSSPYLR--CGRPVQLQHQQGSHKVNGN 281
>04_04_1049 +
30414545-30414596,30414732-30414853,30415121-30415198,
30415329-30415459,30415644-30417552,30417797-30417836,
30418194-30418259,30418583-30418734
Length = 849
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +2
Query: 191 ANVRHGSGNARSRRPNLQELPAWSVEERG 277
+++ G G++ SRR +L P+ +V+ERG
Sbjct: 155 SSMERGGGSSSSRRRSLSREPSSAVQERG 183
>02_05_1148 - 34458732-34460627,34462299-34462547
Length = 714
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 182 CETANVRHGSGNARSRRPNLQELP 253
C ANV+HGS N R +ELP
Sbjct: 114 CIAANVKHGSNNCPVCRTKWKELP 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,488,383
Number of Sequences: 37544
Number of extensions: 312660
Number of successful extensions: 873
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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