Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_I04
(659 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41110-4|AAA82419.1| 575|Caenorhabditis elegans Hypothetical pr... 34 0.078
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr... 32 0.31
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ... 32 0.31
Z79598-1|CAB01867.3| 586|Caenorhabditis elegans Hypothetical pr... 31 0.72
Z81098-2|CAB03182.1| 961|Caenorhabditis elegans Hypothetical pr... 31 0.96
Z79598-2|CAB01864.1| 738|Caenorhabditis elegans Hypothetical pr... 31 0.96
U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical p... 29 2.2
Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z34802-6|CAB54282.1| 594|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z34802-5|CAA84337.1| 610|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr... 29 3.9
AF304125-1|AAG50238.1| 542|Caenorhabditis elegans 1D304 protein. 29 3.9
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein. 29 3.9
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein. 29 3.9
AC024201-8|AAF36020.1| 542|Caenorhabditis elegans Hypothetical ... 29 3.9
AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of... 28 6.8
AF022974-5|AAC48036.3| 347|Caenorhabditis elegans Seven tm rece... 28 6.8
Z66565-4|CAA91480.1| 384|Caenorhabditis elegans Hypothetical pr... 27 8.9
AF025460-5|AAB70988.5| 584|Caenorhabditis elegans Polh (dna pol... 27 8.9
AC084197-41|AAG23462.3| 493|Caenorhabditis elegans Ligand-gated... 27 8.9
AB244413-1|BAE72703.1| 584|Caenorhabditis elegans DNA polymeras... 27 8.9
>U41110-4|AAA82419.1| 575|Caenorhabditis elegans Hypothetical
protein ZK682.5 protein.
Length = 575
Score = 34.3 bits (75), Expect = 0.078
Identities = 12/46 (26%), Positives = 27/46 (58%)
Frame = +3
Query: 519 QVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFAN 656
Q+ + + + + + + F G++DLY+++L N + ++ P FAN
Sbjct: 331 QIQAIVLNKNRLSQVRADFFEGLNDLYSIDLQGNRIDNVQPLGFAN 376
>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 32.3 bits (70), Expect = 0.31
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 513 LHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETF 650
L + + + + I I P AF G+H+L+ + L NN+ L +TF
Sbjct: 310 LKNLTRLDLSKNIITEIQPKAFLGLHNLHTLVLYGNNITDLKSDTF 355
Score = 28.3 bits (60), Expect = 5.1
Identities = 26/114 (22%), Positives = 50/114 (43%)
Frame = +3
Query: 318 VLYNEDRPCPRDCICSVSQGYRQAKCSFLEIGTQKFGDDILDLVVENADPRYPINLDDFM 497
+L E CP +C+C V + E+ Q +D + L +++ + I +DF
Sbjct: 9 LLIPESATCPAECVC-VDRTVSCVGQQLTEV-PQNIPNDTIRLDLQDNEIT-KIGPNDFS 65
Query: 498 FKKLGLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANN 659
L + ++++++ I I +F + L + LS N ++ L F NN
Sbjct: 66 ----SLMNLKALQLMDNQIVTIHNQSFSSLVFLQKLRLSRNRIRHLPDNVFQNN 115
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 507 LGLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETF 650
LGLH + T+ + + I + + F G+ L + L+ N L + TF
Sbjct: 332 LGLHNLHTLVLYGNNITDLKSDTFEGLGSLQLLLLNANQLTCIRRGTF 379
>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 32.3 bits (70), Expect = 0.31
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 513 LHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETF 650
L + + + + I I P AF G+H+L+ + L NN+ L +TF
Sbjct: 310 LKNLTRLDLSKNIITEIQPKAFLGLHNLHTLVLYGNNITDLKSDTF 355
Score = 28.3 bits (60), Expect = 5.1
Identities = 26/114 (22%), Positives = 50/114 (43%)
Frame = +3
Query: 318 VLYNEDRPCPRDCICSVSQGYRQAKCSFLEIGTQKFGDDILDLVVENADPRYPINLDDFM 497
+L E CP +C+C V + E+ Q +D + L +++ + I +DF
Sbjct: 9 LLIPESATCPAECVC-VDRTVSCVGQQLTEV-PQNIPNDTIRLDLQDNEIT-KIGPNDFS 65
Query: 498 FKKLGLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANN 659
L + ++++++ I I +F + L + LS N ++ L F NN
Sbjct: 66 ----SLMNLKALQLMDNQIVTIHNQSFSSLVFLQKLRLSRNRIRHLPDNVFQNN 115
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 507 LGLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETF 650
LGLH + T+ + + I + + F G+ L + L+ N L + TF
Sbjct: 332 LGLHNLHTLVLYGNNITDLKSDTFEGLGSLQLLLLNANQLTCIRRGTF 379
>Z79598-1|CAB01867.3| 586|Caenorhabditis elegans Hypothetical
protein C44H4.1 protein.
Length = 586
Score = 31.1 bits (67), Expect = 0.72
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +3
Query: 513 LHQVATVKIVNSTIGYIAPNAFHGVHD---LYAVNLSNNNLKSLHP 641
L Q+ + + ++ I Y+ NAF H L ++LS NNL ++HP
Sbjct: 131 LKQLKILSLPDNLIEYVQDNAFLSYHSRDSLLKLDLSANNLTAIHP 176
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 522 VATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANN 659
+ ++ I N+ I + AF G + + L NN L+S HP TF N
Sbjct: 61 IDSLTISNTPIEKMPGYAFQGFQ-IKKLFLRNNGLRSFHPNTFTGN 105
>Z81098-2|CAB03182.1| 961|Caenorhabditis elegans Hypothetical
protein K07A12.2 protein.
Length = 961
Score = 30.7 bits (66), Expect = 0.96
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Frame = +3
Query: 345 PRDCICSVSQGYRQAKCSFLEIGTQKFGDDILDLV-VENADPRYPINLDDFMFKKLGLHQ 521
P C C +S+ C+ ++ T I V D + +N D + L +
Sbjct: 27 PEKCDCKISKSMIILSCNGEDVKT------IAQTVGTSQIDELHILNGTDVKIESLPFNG 80
Query: 522 VATVKIVNSTIGYIAPNAFHGVH-DLYAVNLSNNNLKSL 635
+ T+ I+NST+ +P A+ V + + ++ N LK++
Sbjct: 81 LRTIAILNSTLQSFSPTAWRHVEATIEHITINGNELKTV 119
>Z79598-2|CAB01864.1| 738|Caenorhabditis elegans Hypothetical
protein C44H4.2 protein.
Length = 738
Score = 30.7 bits (66), Expect = 0.96
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 510 GLHQVATVKIVNSTIGYIAPNA-FHGVHDLYAVNLSNNNLKSLHPETFAN 656
GL + + + N++I I F ++ LY +NL +N + S+H TF N
Sbjct: 97 GLPNLLRLDLSNNSIVEIQEQEIFPNLNKLYDINLGSNKIFSIHTSTFQN 146
>U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical
protein C56E6.6 protein.
Length = 1102
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/54 (24%), Positives = 31/54 (57%)
Frame = +3
Query: 495 MFKKLGLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFAN 656
MF ++ ++ + ++ I I+ +F + +L + LS+NN++++ TF+N
Sbjct: 433 MFGSSSSSELKSLNLAHNKIHSISSRSFSDLDNLQQLRLSHNNIRTITSMTFSN 486
>Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical
protein F10F2.1 protein.
Length = 2507
Score = 29.5 bits (63), Expect = 2.2
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +3
Query: 423 FGDDILDLVVENADPRYPI-NLDDFMFKKLGLHQVATVKIV-NSTIGYIAPNAFHGVHDL 596
FG L+ E PR+ I ++ MF++ +K + NS + Y+A N FH +
Sbjct: 2091 FGQTPSQLLTEAHPPRHSIMSMAPTMFRRHDEDLCMMMKYISNSPVVYLAANTFHQLPQP 2150
Query: 597 YAVNLSNNNLKSLH 638
V ++ N + SL+
Sbjct: 2151 TVVGVAQNLVFSLN 2164
>Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical protein
F10F2.1 protein.
Length = 2507
Score = 29.5 bits (63), Expect = 2.2
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +3
Query: 423 FGDDILDLVVENADPRYPI-NLDDFMFKKLGLHQVATVKIV-NSTIGYIAPNAFHGVHDL 596
FG L+ E PR+ I ++ MF++ +K + NS + Y+A N FH +
Sbjct: 2091 FGQTPSQLLTEAHPPRHSIMSMAPTMFRRHDEDLCMMMKYISNSPVVYLAANTFHQLPQP 2150
Query: 597 YAVNLSNNNLKSLH 638
V ++ N + SL+
Sbjct: 2151 TVVGVAQNLVFSLN 2164
>Z34802-6|CAB54282.1| 594|Caenorhabditis elegans Hypothetical
protein M88.6b protein.
Length = 594
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +3
Query: 510 GLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSL 635
G+ + + + N + I AF G++ L + LSNNNL+++
Sbjct: 197 GMKNLKKLTLQNCNLEIIQKGAFRGLNSLEQLILSNNNLENI 238
>Z34802-5|CAA84337.1| 610|Caenorhabditis elegans Hypothetical
protein M88.6a protein.
Length = 610
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +3
Query: 510 GLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSL 635
G+ + + + N + I AF G++ L + LSNNNL+++
Sbjct: 197 GMKNLKKLTLQNCNLEIIQKGAFRGLNSLEQLILSNNNLENI 238
>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical
protein C12C8.3b protein.
Length = 1143
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/29 (55%), Positives = 16/29 (55%)
Frame = +2
Query: 569 QCFPWCP*PLRSQPIQQQPKEPSS*DVCE 655
Q FP P PL SQP QQQP P CE
Sbjct: 348 QTFP-IPSPLGSQPQQQQPMGPIQCQGCE 375
>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical
protein C12C8.3a protein.
Length = 1147
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/29 (55%), Positives = 16/29 (55%)
Frame = +2
Query: 569 QCFPWCP*PLRSQPIQQQPKEPSS*DVCE 655
Q FP P PL SQP QQQP P CE
Sbjct: 348 QTFP-IPSPLGSQPQQQQPMGPIQCQGCE 375
>AF304125-1|AAG50238.1| 542|Caenorhabditis elegans 1D304 protein.
Length = 542
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +3
Query: 531 VKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHP 641
+ I +S + +I P+AF+ + L ++LSNN L+ + P
Sbjct: 314 LSISSSALTHIHPSAFNPIPPLSHLDLSNNELRYVAP 350
>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
Length = 1147
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/29 (55%), Positives = 16/29 (55%)
Frame = +2
Query: 569 QCFPWCP*PLRSQPIQQQPKEPSS*DVCE 655
Q FP P PL SQP QQQP P CE
Sbjct: 348 QTFP-IPSPLGSQPQQQQPMGPIQCQGCE 375
>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
Length = 1143
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/29 (55%), Positives = 16/29 (55%)
Frame = +2
Query: 569 QCFPWCP*PLRSQPIQQQPKEPSS*DVCE 655
Q FP P PL SQP QQQP P CE
Sbjct: 348 QTFP-IPSPLGSQPQQQQPMGPIQCQGCE 375
>AC024201-8|AAF36020.1| 542|Caenorhabditis elegans Hypothetical
protein Y71F9B.8 protein.
Length = 542
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +3
Query: 531 VKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHP 641
+ I +S + +I P+AF+ + L ++LSNN L+ + P
Sbjct: 314 LSISSSALTHIHPSAFNPIPPLSHLDLSNNELRYVAP 350
>AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of
constitutive dauerformation protein 2 protein.
Length = 1446
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 518 PGCYCKNREQHDWLYRPQCFPWCP 589
P CYC RE+H L + +C W P
Sbjct: 153 PDCYCGKREKHCDLSKEKCH-WTP 175
>AF022974-5|AAC48036.3| 347|Caenorhabditis elegans Seven tm
receptor protein 208 protein.
Length = 347
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/51 (23%), Positives = 24/51 (47%)
Frame = -1
Query: 458 VFDHEIKDIIAELLCTDFEEAALGLSVSLRYRAYAVSGTGPVLVVQNLLVF 306
+ +++ ++ L C F + SV YR +AVSG + + + +F
Sbjct: 83 LLSYDVLLLLVSLCCAFFGSLMVMFSVQFIYRFWAVSGNNSIKTFEGVRIF 133
>Z66565-4|CAA91480.1| 384|Caenorhabditis elegans Hypothetical
protein T04F8.4 protein.
Length = 384
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -2
Query: 499 NMKSSRLIG*RGSAFSTTRSRISSPNFCVPISRKLHLACLY 377
NM R+I G FST P F + + H+ C+Y
Sbjct: 93 NMDRQRMIAPEGMMFSTVLIISFHPLFLTRMDKAYHIRCMY 133
>AF025460-5|AAB70988.5| 584|Caenorhabditis elegans Polh (dna
polymerase eta) homologprotein 1 protein.
Length = 584
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 506 TRTSPGCYCKNREQHDWLY 562
TR PG +NR H+WLY
Sbjct: 426 TRFQPGIPAQNRSIHEWLY 444
>AC084197-41|AAG23462.3| 493|Caenorhabditis elegans Ligand-gated
ion channel protein 10 protein.
Length = 493
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -3
Query: 456 FRPRDQGYHRRTFVYRFRGSCTWLVC--IPEIQSICSLWD 343
+R R R YRF C L+ +PEIQSIC + +
Sbjct: 386 YRKRRSTVFRGVHNYRFNQECDDLMYSKVPEIQSICMMME 425
>AB244413-1|BAE72703.1| 584|Caenorhabditis elegans DNA polymerase
eta protein.
Length = 584
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 506 TRTSPGCYCKNREQHDWLY 562
TR PG +NR H+WLY
Sbjct: 426 TRFQPGIPAQNRSIHEWLY 444
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,402,819
Number of Sequences: 27780
Number of extensions: 305836
Number of successful extensions: 991
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -