Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_I02
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   162   3e-41
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   161   6e-41
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    26   4.1  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    26   5.5  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   7.2  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   9.5  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  162 bits (394), Expect = 3e-41
 Identities = 82/154 (53%), Positives = 96/154 (62%)
 Frame = +1

Query: 103 LSVARPLXSVYSEKSETVQGCSQAXXXXXXXXXXXXDLVNDVHVSMSKNSRQPYCVSKEA 282
           ++ ARP  S+YS K  +V   + A            DLV  VH +++KN RQPY VS++A
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRP-DLVRSVHTAVAKNKRQPYAVSEKA 58

Query: 283 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXX 462
           GHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH      
Sbjct: 59  GHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQN 118

Query: 463 XXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPL 564
                               ARGH IE+IPE+PL
Sbjct: 119 EKRYAISSAVAASGVPSLLLARGHRIEEIPEVPL 152


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  161 bits (392), Expect = 6e-41
 Identities = 81/154 (52%), Positives = 96/154 (62%)
 Frame = +1

Query: 103 LSVARPLXSVYSEKSETVQGCSQAXXXXXXXXXXXXDLVNDVHVSMSKNSRQPYCVSKEA 282
           ++ ARP  S+Y+ K  +V   + A            DLV  VH +++KN RQPY VS++A
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRP-DLVRSVHTAVAKNKRQPYAVSEKA 58

Query: 283 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXX 462
           GHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH      
Sbjct: 59  GHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQN 118

Query: 463 XXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPL 564
                               ARGH IE+IPE+PL
Sbjct: 119 EKRYAIASAVAASGVPSLLLARGHRIEEIPEVPL 152


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/28 (46%), Positives = 22/28 (78%)
 Frame = -2

Query: 576 SATTQGKLGNLFNNVSSSLNERWDASSS 493
           SAT+  +L ++F+N+SSS++   DASS+
Sbjct: 670 SATSNSQLSSIFSNLSSSIS---DASSN 694


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 532 HIIEKIPELPLGCSRQSPGDQQDQTGCH 615
           H++EK+ E+ + C R       ++  CH
Sbjct: 264 HLLEKLTEVNVMCDRHMDAISSEELACH 291


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 539  LKRFPSFPWVVAD 577
            L ++P FPWV+AD
Sbjct: 1947 LTQYPVFPWVIAD 1959


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 9   FFTPPXAWRMVFITAI 56
           FF  P  WRM FIT I
Sbjct: 59  FFPSPDNWRMSFITVI 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,575,037
Number of Sequences: 5004
Number of extensions: 48348
Number of successful extensions: 141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)