Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_H13
(659 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom... 50 2e-07
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc... 39 7e-04
SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo... 36 0.007
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy... 29 0.59
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 28 1.4
SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c... 27 2.4
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 26 5.5
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 7.3
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 25 7.3
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c... 25 7.3
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 25 9.7
>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 50.4 bits (115), Expect = 2e-07
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Frame = +3
Query: 231 SSEKVIGKAL--VGVPRDSYYIGSKVGRYDKDTL-KMFDFSAEKTAAGLDNTLSLLGLDY 401
+SE V+GKA+ +G R Y I +KV L S + GL+ +L LGL Y
Sbjct: 71 NSETVMGKAIKELGWDRSEYVITTKVFFGAGTKLPNTTGLSRKHIIEGLNASLKRLGLPY 130
Query: 402 VDLIQVHDITFAPDTSVVLKETLPVLEQAVRDGKARFIGIADY 530
VD+I H PD SV ++E + Q ++DGKA + G +++
Sbjct: 131 VDVIMAH----RPDPSVPMEEVVRAFTQLIQDGKAFYWGTSEW 169
>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 275
Score = 38.7 bits (86), Expect = 7e-04
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Frame = +3
Query: 321 TLKMFDFSAEK-TAAGLDNTLSLLGLDYVDLIQVHDITFAPDTSVVLKETLPVLEQAVRD 497
T K+ D S K T + +D ++ GL Y+DL +H +P + E+ LE+ V +
Sbjct: 77 TSKLNDLSGYKSTLSSIDASVKACGLGYIDLFLLH----SPYGDRI--ESWKALEKGVEE 130
Query: 498 GKARFIGIADYDIDLMKEVXKESEVKISTILSYSKSTPFXNR 623
GK R IG++++ ++E+ +S KI ++ + PF ++
Sbjct: 131 GKLRAIGVSNFGPHHIQELL-DSHPKIIPCVNQIELHPFCSQ 171
>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
YakC|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 35.5 bits (78), Expect = 0.007
Identities = 19/54 (35%), Positives = 34/54 (62%)
Frame = +3
Query: 366 LDNTLSLLGLDYVDLIQVHDITFAPDTSVVLKETLPVLEQAVRDGKARFIGIAD 527
LD +L LG+D +DL VH F+ +T + ++ + L++ V GK R+IG+++
Sbjct: 108 LDLSLKRLGIDCIDLYYVH--RFSGETPI--EKIMGALKKCVEAGKIRYIGLSE 157
>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 276
Score = 29.1 bits (62), Expect = 0.59
Identities = 17/69 (24%), Positives = 37/69 (53%)
Frame = +3
Query: 348 EKTAAGLDNTLSLLGLDYVDLIQVHDITFAPDTSVVLKETLPVLEQAVRDGKARFIGIAD 527
E+T ++ +L G +D++ +H +P V E+ L Q ++G+ IG+++
Sbjct: 86 ERTWKAVEQSLRRTGRPKLDVVLIH----SPKWPVRRIESWRALLQHQKEGRINKIGVSN 141
Query: 528 YDIDLMKEV 554
Y+I ++E+
Sbjct: 142 YNIHHLEEI 150
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 27.9 bits (59), Expect = 1.4
Identities = 25/114 (21%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Frame = +3
Query: 222 VRASSEKVIGKALVGVPRDSYYIGSK--VGRYDKDTLKMFDFSAEKTAAGLDNTL--SLL 389
+RA +EK KA D+Y++G+K V Y + F+ + E +A L + + +
Sbjct: 176 IRAEAEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGPSADLHSGVFGGTV 235
Query: 390 GLDYVDLIQVHDITFAPDTSVVLKETLPVLEQAVRDGKARFIGIADYDIDLMKE 551
DL+ + P+ +++ + + + + + GI DY ++ +KE
Sbjct: 236 HEPMTDLVAIMSTLVKPNGEILIPGIMDQVAELTPTEDSIYDGI-DYTMEDLKE 288
>SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 334
Score = 27.1 bits (57), Expect = 2.4
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = +3
Query: 402 VDLIQVHDITFAPDTSVVLKETLPVLEQAVRDGKARFIGIADYDIDLMKEVXKESEVKIS 581
+DL Q I PDT + +ET+ L++ V G R IG+ + ++ +K S V+I+
Sbjct: 117 IDLYQCAAID--PDTPI--EETMACLKEFVDSGDIRCIGLCEPSVEEIKRA--HSVVRIA 170
Query: 582 TI 587
I
Sbjct: 171 AI 172
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -2
Query: 439 GAKVISCTWIRST*SKPSSERVLSRPAAVFSAEKSNIFRVSLS*RPTLL 293
G + C W +S PSS+ +LS+P + S+E+ + LS TLL
Sbjct: 768 GRVIKICDWYQS----PSSDVLLSKPLQLNSSEEMEQQCIDLSRHNTLL 812
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 442 SGAKVISCTWIRST*SKPSSERVLSRPAAVFS 347
+G++ IS +W+ T S+P + VLS + FS
Sbjct: 1529 AGSEDISSSWLGRTVSRPRLDTVLSSLGSKFS 1560
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 222 VRASSEKVIGKALVGVPRDSYYIGSKV 302
+R S +V+G AL+ VP DS + KV
Sbjct: 445 IRESVSQVLGVALIYVPNDSVFSMYKV 471
>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 25.4 bits (53), Expect = 7.3
Identities = 25/107 (23%), Positives = 44/107 (41%)
Frame = +3
Query: 243 VIGKALVGVPRDSYYIGSKVGRYDKDTLKMFDFSAEKTAAGLDNTLSLLGLDYVDLIQVH 422
VI K + S G V Y K+ + + T+ G+ L +D + I+
Sbjct: 608 VIFKRTSWLKAASVVSGRFVNGYKKNDW-ILGYLFRATSGGIGRVAGLRQIDCIPGIENI 666
Query: 423 DITFAPDTSVVLKETLPVLEQAVRDGKARFIGIADYDIDLMKEVXKE 563
D+T + +E++P+L AV + D ++DL+ E E
Sbjct: 667 DVTNLVSGHLAYRESMPILLAAVG------FEVLDEEVDLVSEPIPE 707
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +1
Query: 154 KPGAH*RKLESRYQLSGNRTLVRSGPAPKRSLG 252
KPG H + L NR L+ GP KRS G
Sbjct: 828 KPGEH----YDLHLLDANRQLIFKGPLKKRSAG 856
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,586,506
Number of Sequences: 5004
Number of extensions: 51535
Number of successful extensions: 153
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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