Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_H13
         (659 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   4.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   4.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   4.5  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   4.5  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    22   6.0  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   7.9  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   7.9  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   7.9  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   7.9  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 186 SVSTIWKPDPGTVRAS 233
           +++ +WK D GT+R S
Sbjct: 213 AITYVWKNDEGTLRKS 228


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 186 SVSTIWKPDPGTVRAS 233
           +++ +WK D GT+R S
Sbjct: 213 AITYVWKNDEGTLRKS 228


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 186 SVSTIWKPDPGTVRAS 233
           +++ +WK D GT+R S
Sbjct: 264 AITYVWKNDEGTLRKS 279


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 186 SVSTIWKPDPGTVRAS 233
           +++ +WK D GT+R S
Sbjct: 213 AITYVWKNDEGTLRKS 228


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 237 EKVIGKALVGVPRDSYYIG 293
           E VIGK +V V R+  Y G
Sbjct: 101 EVVIGKEIVAVCRNEEYTG 119


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -1

Query: 455 YNRSVRSKSYIMYLDQIDI 399
           YN+ +  K+YI+ ++QI +
Sbjct: 100 YNKKLYYKNYIINIEQIPV 118


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -1

Query: 455 YNRSVRSKSYIMYLDQIDI 399
           YN+ +  K+YI+ ++QI +
Sbjct: 111 YNKKLYYKNYIINIEQIPV 129


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -1

Query: 455 YNRSVRSKSYIMYLDQIDI 399
           YN+ +  K+YI+ ++QI +
Sbjct: 341 YNKKLYYKNYIINIEQIPV 359


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -1

Query: 455 YNRSVRSKSYIMYLDQIDI 399
           YN+ +  K+YI+ ++QI +
Sbjct: 336 YNKKLYYKNYIINIEQIPV 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,362
Number of Sequences: 438
Number of extensions: 3633
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)