Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_H02
         (520 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|ch...    27   2.2  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   5.1  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    25   6.8  
SPAC30C2.05 |erv14||cornichon family protein Erv14|Schizosacchar...    25   9.0  

>SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = -1

Query: 202 TSTFRNINT---KK*HQVIKKFCYRSFNTIFTLKN*IILYGL*KCHSFIEKYISYVFYLI 32
           T  F NI     ++  Q ++  C+ +FN I  +   I+ YGL   H  +  +  YVF +I
Sbjct: 183 TPAFINITAMWYRREEQPMRTLCWYAFNGIAQIIGSILSYGLGHIHGKVASW-RYVFIVI 241


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 492  FSYCFVCFNFIQFMVGFN 439
            FSY + CF+FI +++  N
Sbjct: 3520 FSYQYACFSFITYILSIN 3537


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +1

Query: 400 F*FERLQIDFANPIKTNHKLNKIETHETV 486
           F  +++++    PI++  K   +ETH+T+
Sbjct: 668 FRMKKIRVQLNLPIRSEQKQESLETHKTI 696


>SPAC30C2.05 |erv14||cornichon family protein
           Erv14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 141

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 406 FERLQIDFANPIKTNHKLNKIETHETVA 489
           F  L++D+ NPI   +KLN +   E ++
Sbjct: 34  FSDLEMDYINPIDLCNKLNDLVMPEIIS 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,850,874
Number of Sequences: 5004
Number of extensions: 33847
Number of successful extensions: 72
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)