Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_H02
         (520 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0045 + 12328388-12328419,12328504-12328645,12328862-123290...    29   2.2  
06_01_1083 - 8859190-8859450,8859555-8859626                           28   3.9  
08_01_0025 - 184899-185384,185707-185940,187156-187341,188108-18...    27   9.0  

>10_07_0045 +
           12328388-12328419,12328504-12328645,12328862-12329054,
           12329224-12329320,12329404-12329528,12329616-12329734,
           12331225-12331298,12331359-12331413,12331450-12331500,
           12331611-12331857,12331940-12332036,12332170-12332244,
           12334286-12334488,12334757-12334905,12334995-12335168,
           12335276-12335401,12335493-12335623,12335743-12335818,
           12335898-12336027,12336115-12336193,12336267-12336465,
           12336591-12336698,12336769-12337025,12337267-12337282
          Length = 984

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = -2

Query: 249 VKQL*NKSISFLHLRIPQHFVTLILKNSIK*LRNFVIDPLILYLHLKTK---*FCMDSRN 79
           + +L  K  + ++ R  +HF  L+   S+    N   DP  + +HL+ K    FCM   N
Sbjct: 55  IDELGTKMEAIVYRRQAEHFNQLLRCGSVYDFYNVGFDPTEMIVHLRFKIRSQFCMILNN 114

Query: 78  VTVS 67
           VT +
Sbjct: 115 VTTT 118


>06_01_1083 - 8859190-8859450,8859555-8859626
          Length = 110

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 419 CSRSN*KKNCLTAPNSCCTK 360
           CS +  KK CLT  N CC K
Sbjct: 60  CSNTQYKKACLTFCNKCCAK 79


>08_01_0025 -
           184899-185384,185707-185940,187156-187341,188108-188158
          Length = 318

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 489 SYCFVCFNFIQFMVGFNG-IREINL*SFELKKKLFNS 382
           +YCF+CF F+  + GF+  +   N  ++E  K  +N+
Sbjct: 133 AYCFICFWFVGGLTGFHSYLIATNKTTYENLKYKYNN 169


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,626,389
Number of Sequences: 37544
Number of extensions: 151874
Number of successful extensions: 220
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)