Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_H01
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    72   6e-14
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha...    57   2e-09
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    56   4e-09
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    52   7e-08
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    47   2e-06
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    44   2e-05
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    32   0.076
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    30   0.31 
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    25   6.6  
SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|c...    25   6.6  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    25   8.7  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   8.7  

>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 72.1 bits (169), Expect = 6e-14
 Identities = 34/90 (37%), Positives = 51/90 (56%)
 Frame = +2

Query: 122 IKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXX 301
           + DS + K+ + +  DKLVV+DF ATWCGPCK I PK ++  +                 
Sbjct: 5   VSDSSEFKSIVCQ--DKLVVVDFFATWCGPCKAIAPKFEQF-SNTYSDATFIKVDVDQLS 61

Query: 302 XXASEYNINSMPTFVFVKNGKKLDEFSGAN 391
             A+E  +++MP+F   KNG+K++E  GAN
Sbjct: 62  EIAAEAGVHAMPSFFLYKNGEKIEEIVGAN 91


>SPBC12D12.07c |trx2||mitochondrial thioredoxin
           Trx2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 56.8 bits (131), Expect = 2e-09
 Identities = 28/91 (30%), Positives = 47/91 (51%)
 Frame = +2

Query: 122 IKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXX 301
           ++   D  TR++   DK+ V+DF A WCGPCK + P L+++ +E                
Sbjct: 22  VESFGDYNTRIS--ADKVTVVDFYADWCGPCKYLKPFLEKL-SEQNQKASFIAVNADKFS 78

Query: 302 XXASEYNINSMPTFVFVKNGKKLDEFSGANV 394
             A +  + ++PT V  + G++LD   GA+V
Sbjct: 79  DIAQKNGVYALPTMVLFRKGQELDRIVGADV 109


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 56.0 bits (129), Expect = 4e-09
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +2

Query: 176 VVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXX-ASEYNINSMPTFVFV 352
           + +D  A WCGPCK I P   ++A++                   AS   + +MPTFVF 
Sbjct: 22  LAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFF 81

Query: 353 KNGKKLDEFSGAN 391
           +NGK++D  +GAN
Sbjct: 82  ENGKQIDMLTGAN 94


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 52.0 bits (119), Expect = 7e-08
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +2

Query: 167 DKLVVIDFMATWCGPCKMIGPKLDEIAAEM-XXXXXXXXXXXXXXXXXASEYNINSMPTF 343
           DK++++ F A WCG CK + P+ +  A E+                   SEY+I   PT 
Sbjct: 39  DKVLMVKFYAPWCGHCKALAPEYESAADELEKDGISLVEVDCTEEGDLCSEYSIRGYPTL 98

Query: 344 VFVKNGKKLDEFSG 385
              KNGK++ ++SG
Sbjct: 99  NVFKNGKQISQYSG 112



 Score = 36.7 bits (81), Expect = 0.003
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = +2

Query: 170 KLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXXASEYNINSMPTFVF 349
           K V+++F A WCG CK + P  +++A E                   S  +I+  PT +F
Sbjct: 374 KDVLVEFYAPWCGHCKNLAPTYEKLAEEYSDDSNVVVAKIDATENDIS-VSISGFPTIMF 432

Query: 350 VKNGKKLD 373
            K   K++
Sbjct: 433 FKANDKVN 440


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 23/94 (24%), Positives = 42/94 (44%)
 Frame = +2

Query: 110 MSIHIKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXX 289
           MS+ I   +  +  L    +++++++F A W  PCK +    D+ A +            
Sbjct: 1   MSVEITFVEQFQEILQNGKEQIILLNFYAPWAAPCKQMNQVFDQFAKD-TKNAVFLKIEA 59

Query: 290 XXXXXXASEYNINSMPTFVFVKNGKKLDEFSGAN 391
                 A  +++N++P FV +   K L   SGAN
Sbjct: 60  EKFSDIAESFDVNAVPLFVLIHGAKVLARISGAN 93


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
 Frame = +2

Query: 74  VILFLVSIYLPKMSIHIKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAA- 250
           VI  L ++      + ++  ++L+  +  A  K  +I+F ATWCG CK + P  +E+ A 
Sbjct: 9   VIFALFALVFASGVVELQSLNELENTI-RASKKGALIEFYATWCGHCKSLAPVYEELGAL 67

Query: 251 -EMXXXXXXXXXXXXXXXXXASEYNINSMPTFV-FVKNGKKLDEFSGA 388
            E                  A +Y+I   PT + F  +G +  ++S A
Sbjct: 68  FEDHNDVLIGKIDADTHSDVADKYHITGFPTLIWFPPDGSEPVQYSNA 115



 Score = 30.3 bits (65), Expect = 0.23
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 170 KLVVIDFMATWCGPCKMIGPKLDEI 244
           K V+++F A WCG CK + P  + +
Sbjct: 159 KDVLVEFYADWCGYCKRLAPTYETL 183


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 31.9 bits (69), Expect = 0.076
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
 Frame = +2

Query: 128 DSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXX 307
           +S + +  +   G  LVV  F A WCG CK + P   ++A+ +                 
Sbjct: 37  NSKNFRKFVKAKGPSLVV--FYAPWCGYCKKLVPTYQKLASNLHSLLPVTAVDCDADQNR 94

Query: 308 A--SEYNINSMPTFVFVKNGKKLDEFSGAN 391
           A  S+Y +   PT   V    K    S  +
Sbjct: 95  AVCSQYQVQGFPTIKLVYPSSKGSSLSSTD 124


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 3/104 (2%)
 Frame = +2

Query: 74  VILFLVSIYLPKMSIHIKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLD---EI 244
           V+ F+  +      + + D+D L++ +++       I +    CG CK +GP  D   E 
Sbjct: 15  VVAFITMVQTLVSGVPLTDND-LESEVSKG---TWFIKYYLPSCGACKRLGPMWDNMVEK 70

Query: 245 AAEMXXXXXXXXXXXXXXXXXASEYNINSMPTFVFVKNGKKLDE 376
           A E                  +S  NI ++PT    +NG+ ++E
Sbjct: 71  AKEQVEGSNFHFGEVDCSKELSSCANIRAVPTLYLYQNGEIVEE 114


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 557 NIFKFITDVKNIFSSFIKNVYMFFFF*FHLVSIGGC 450
           N   ++TD +NIF +F+ N   + F    L  I  C
Sbjct: 76  NSIDYLTDTQNIFPNFVNNENNYQFSTAPLNPIDAC 111


>SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 487 KNMYTFLINEEKMFLTSVMNLK 552
           +N Y +L+NE+  FLTS+  +K
Sbjct: 262 RNHYIYLLNEQVDFLTSIEIMK 283


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 128 DSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAA 250
           + D +  RL EAG  +     +A  CGPC  +  + D+IA+
Sbjct: 431 ERDGITERLEEAGATV-----LANACGPCIGMWKRTDDIAS 466


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 502 FLINEEKMFLTSVMNLKILIFXVC-SLWNAKN 594
           + +N +K+  +S+  L  LIF VC  LW +++
Sbjct: 223 YQLNLDKVIHSSLKKLSFLIFKVCIRLWGSQS 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,174,012
Number of Sequences: 5004
Number of extensions: 39169
Number of successful extensions: 132
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)