Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_G16
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    32   0.063
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    27   1.8  
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    25   9.5  

>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 32.3 bits (70), Expect = 0.063
 Identities = 13/31 (41%), Positives = 23/31 (74%)
 Frame = -2

Query: 604 DTRMSIWRTKSKLKGSPVSIKEFLTKSRQAV 512
           D R S+WR ++KLK S  ++K+ L++S +A+
Sbjct: 467 DKRKSLWREEAKLKSSIENVKDDLSRSEKAL 497


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 9/32 (28%), Positives = 22/32 (68%)
 Frame = +2

Query: 392  VAKLIHSGQSVTISIRSLDNNDPVLRPTLTHT 487
            +++ ++S   +  +++ LD+ DP+ +P+L HT
Sbjct: 939  LSEKLNSDNHIPKALQKLDSADPIRKPSLLHT 970


>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +2

Query: 410 SGQSVTISIRSLDNNDPVLRPTLTHTKILTALAEHRLSRFCKEFLDGH 553
           +  S+ IS   + N DP L+ +   T       E R+  FC+ +   H
Sbjct: 132 TNDSILISPSEITNMDPFLKGSARWTAEHWDYLERRMQNFCQTYSLDH 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,323,818
Number of Sequences: 5004
Number of extensions: 40702
Number of successful extensions: 101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)