Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_G16
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0686 + 26280772-26281611                                         29   2.4  
01_07_0354 - 42969824-42969991,42970081-42970217,42970310-429704...    29   4.3  
01_05_0335 + 21074117-21074241,21074299-21074929,21075359-210753...    27   9.9  

>11_06_0686 + 26280772-26281611
          Length = 279

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = -1

Query: 518 GGVRQEPSVFWCASMLDARRGHYY--QDCEWKSSQID 414
           GG  Q+    +C        GHYY    C+W S ++D
Sbjct: 226 GGYHQQRGGHYCHCAAGDGHGHYYSPSSCQWHSDRVD 262


>01_07_0354 -
           42969824-42969991,42970081-42970217,42970310-42970449,
           42970703-42970806,42970924-42971040,42971137-42971223,
           42971309-42971410,42971643-42971740,42971835-42971910,
           42971992-42972156
          Length = 397

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 23/90 (25%), Positives = 41/90 (45%)
 Frame = +3

Query: 339 LPLADVGLPSTIGYLTARSLNSSIVVNL*RFPFAVLIIMTPSCVQH*RTPKY*RLLPNTA 518
           + ++ VG+PSTI  L +  L S++ V+L      +   + PS   +          P  A
Sbjct: 224 ITISTVGVPSTIKKLASHKLQSTLAVSLHAPNQKLRETIVPSAKSY----------PLEA 273

Query: 519 CRDFVRNSLMDTGEPLSLDFVLQIDIRVSK 608
             D  +N  ++TG  +S ++ L   I  +K
Sbjct: 274 LMDDCKNYFLETGRRVSFEYTLLAGINDAK 303


>01_05_0335 +
           21074117-21074241,21074299-21074929,21075359-21075399,
           21078458-21078560,21078755-21079601,21079938-21080689,
           21080712-21080970,21081011-21081354
          Length = 1033

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -2

Query: 457 VIIIKTANGNRHRLTTMDEFSDLAVKYPIVDGKPTSAKGSVSKAAPAITVNSKLRKT 287
           V+ ++  +  + RL  +DEF       P +  +PT   G VS  A   TV  K+R T
Sbjct: 286 VLFLRLVDRRQERLEVLDEFLPQLPHRPSIPFRPT--PGLVSLFAKTGTVRQKVRFT 340


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,034,597
Number of Sequences: 37544
Number of extensions: 265959
Number of successful extensions: 585
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)